BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0745800 Os02g0745800|AK059598
(104 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0745800 Protein of unknown function DUF616 family protein 220 1e-58
Os11g0198100 Protein of unknown function DUF616 family protein 145 6e-36
Os05g0531500 Protein of unknown function DUF616 family protein 84 3e-17
Os01g0304300 Protein of unknown function DUF616 family protein 82 7e-17
Os06g0724300 Protein of unknown function DUF616 family protein 82 1e-16
Os01g0749100 Protein of unknown function DUF616 family protein 65 1e-11
>Os02g0745800 Protein of unknown function DUF616 family protein
Length = 104
Score = 220 bits (561), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 ITQYEYFFSIDLLHHNCADVPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYTY 60
ITQYEYFFSIDLLHHNCADVPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYTY
Sbjct: 1 ITQYEYFFSIDLLHHNCADVPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYTY 60
Query: 61 LKLRRMNTGKPFHLNMFKDCERRAITKLFHHRANETADPPPANP 104
LKLRRMNTGKPFHLNMFKDCERRAITKLFHHRANETADPPPANP
Sbjct: 61 LKLRRMNTGKPFHLNMFKDCERRAITKLFHHRANETADPPPANP 104
>Os11g0198100 Protein of unknown function DUF616 family protein
Length = 247
Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 80/106 (75%), Gaps = 8/106 (7%)
Query: 3 QYEYFFSIDLLHHNCAD--------VPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQL 54
Q+E++ + L N +D VPEGSFIVR HTPMSNLFSCLWFNEV+RFT RDQL
Sbjct: 138 QFEFYQADGLTKFNPSDPNKLLPSYVPEGSFIVREHTPMSNLFSCLWFNEVDRFTPRDQL 197
Query: 55 SFAYTYLKLRRMNTGKPFHLNMFKDCERRAITKLFHHRANETADPP 100
SFAYTYLKLRRMN KPF LNMFKDCERR+I KLFHHR+ E P
Sbjct: 198 SFAYTYLKLRRMNPEKPFRLNMFKDCERRSIAKLFHHRSEERRSSP 243
>Os05g0531500 Protein of unknown function DUF616 family protein
Length = 575
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 18 ADVPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYTYLKLRRMNTGKPFHLNMF 77
+DVPEG I+R H P++NLF+CLWFNEV+RFTSRDQ+SF+ K+R P MF
Sbjct: 433 SDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQISFSTVRDKIRARVGWMP---EMF 489
Query: 78 KDCERRAITKLFHHR 92
DCERR +HR
Sbjct: 490 LDCERRNFVIQGYHR 504
>Os01g0304300 Protein of unknown function DUF616 family protein
Length = 90
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%), Gaps = 5/66 (7%)
Query: 19 DVPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYTYLKLR-RMNTGKPFHLNMF 77
DVPEG I+R H P++NLF+CLWFNEV+RFTSRDQLSF+ K+R R+N + +MF
Sbjct: 18 DVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKIRKRVN----WTADMF 73
Query: 78 KDCERR 83
DCERR
Sbjct: 74 LDCERR 79
>Os06g0724300 Protein of unknown function DUF616 family protein
Length = 468
Score = 81.6 bits (200), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 18 ADVPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYTYLKLRRMNTGKPFHLNMF 77
+DVPEG+ ++R HT MS+LFSCLWFNEVN FT RDQLSF Y +L G MF
Sbjct: 346 SDVPEGAVLIREHTTMSDLFSCLWFNEVNLFTPRDQLSFGYVVYRL-----GDALKFFMF 400
Query: 78 KDCERRAITKLFHH 91
+CE ++ L H
Sbjct: 401 PNCEYNSLFILHRH 414
>Os01g0749100 Protein of unknown function DUF616 family protein
Length = 203
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 15 HNCADVPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYTYLKLRRMNTGKPFHL 74
H + E S IVR P++N F C WFNEV RFTSRDQLSF Y L R+N +
Sbjct: 115 HGLKALSEASVIVRELAPVTNHFMCAWFNEVVRFTSRDQLSFPYV---LWRLNMPG---I 168
Query: 75 NMFKDCERRAITKLFHH 91
NMF C RR + H
Sbjct: 169 NMFTVCTRRDLVNSLGH 185
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.138 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,838,950
Number of extensions: 131697
Number of successful extensions: 302
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 6
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)