BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0740900 Os02g0740900|AK108067
(407 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0740900 WD-40 repeat containing protein 671 0.0
Os06g0238700 WD40-like domain containing protein 346 2e-95
Os04g0481600 WD-40 repeat containing protein 208 5e-54
Os03g0738700 WD40-like domain containing protein 176 3e-44
Os12g0594000 WD40-like domain containing protein 173 2e-43
Os03g0625300 WD40-like domain containing protein 164 2e-40
Os01g0232200 116 3e-26
Os01g0946100 WD40-like domain containing protein 115 5e-26
Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3... 66 4e-11
>Os02g0740900 WD-40 repeat containing protein
Length = 407
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/407 (84%), Positives = 343/407 (84%)
Query: 1 MLSGAMSLASQPSLRSLPSLDVHDLNTSPSLHQFIATIKGHXXXXXXXXXXXXDGDSLYI 60
MLSGAMSLASQPSLRSLPSLDVHDLNTSPSLHQFIATIKGH DGDSLYI
Sbjct: 1 MLSGAMSLASQPSLRSLPSLDVHDLNTSPSLHQFIATIKGHSSASAYVSALAVDGDSLYI 60
Query: 61 ASSDGSIRLWALDGARRSQEEQQQDDGCXXXXXXXXXXXXXXXXXXLLATGNGGLLLSSH 120
ASSDGSIRLWALDGARRSQEEQQQDDGC LLATGNGGLLLSSH
Sbjct: 61 ASSDGSIRLWALDGARRSQEEQQQDDGCSSSSSSTTVADTDSSVKSLLATGNGGLLLSSH 120
Query: 121 QDGKIRAWRAGSRRRDGETRPQLVLRAVLPTAVDRLRTCLLPWSYVEIRRHRRCTWVHHV 180
QDGKIRAWRAGSRRRDGETRPQLVLRAVLPTAVDRLRTCLLPWSYVEIRRHRRCTWVHHV
Sbjct: 121 QDGKIRAWRAGSRRRDGETRPQLVLRAVLPTAVDRLRTCLLPWSYVEIRRHRRCTWVHHV 180
Query: 181 DAVTALAVSPDGALLYSASWDRSIKVWSLPGFRCVESXXXXXXXXXXXXXVSPDGRVYTG 240
DAVTALAVSPDGALLYSASWDRSIKVWSLPGFRCVES VSPDGRVYTG
Sbjct: 181 DAVTALAVSPDGALLYSASWDRSIKVWSLPGFRCVESIAAAHDDAINALAVSPDGRVYTG 240
Query: 241 SADKKIKAWTRGPGQRKHALVGTMERHRSAVNALALGANGKVLYSGACDRSVVVWESAXX 300
SADKKIKAWTRGPGQRKHALVGTMERHRSAVNALALGANGKVLYSGACDRSVVVWESA
Sbjct: 241 SADKKIKAWTRGPGQRKHALVGTMERHRSAVNALALGANGKVLYSGACDRSVVVWESAGG 300
Query: 301 XXXXMEATGTLRGHARAILCLAAAGELVCSGSADRTVRVWRRGGAENNGYTCLAVMESHG 360
MEATGTLRGHARAILCLAAAGELVCSGSADRTVRVWRRGGAENNGYTCLAVMESHG
Sbjct: 301 GDGGMEATGTLRGHARAILCLAAAGELVCSGSADRTVRVWRRGGAENNGYTCLAVMESHG 360
Query: 361 AAVKSLALVRXXXXXXXXXXXXXXXALVCSGALDGDVKIWSVFIPCL 407
AAVKSLALVR ALVCSGALDGDVKIWSVFIPCL
Sbjct: 361 AAVKSLALVRGGRDDDGSCSSEGSSALVCSGALDGDVKIWSVFIPCL 407
>Os06g0238700 WD40-like domain containing protein
Length = 495
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 206/387 (53%), Positives = 234/387 (60%), Gaps = 28/387 (7%)
Query: 32 HQFIATIKGHXXXXXXXXXXXXDGDSLYIASSDGSIRLWALDGARRSQEEQQQDDGCXXX 91
+Q IAT+ G+ DGDSLY+ASSDG IRLW LD A E+
Sbjct: 24 YQCIATLSGNSSYVSGLAV---DGDSLYVASSDGHIRLWPLDMAMAMVREESTSSSSQGE 80
Query: 92 XXXXXXXXXXXXXXXLLATGNGGLLLSSHQDGKIRAWR-AGSRRRDGETRPQLVLRAVLP 150
L ATG+G L+SSHQDG IR WR AG RRR L LRAVLP
Sbjct: 81 VSRSTVAVTGSPVKCLAATGDG--LVSSHQDGTIRVWRHAGGRRR-------LALRAVLP 131
Query: 151 TAVDRLRTCLLPWS-YVEIRRHRRCTWVHHVDAVTALAVSPDGALLYSASWDRSIKVWSL 209
TA D LR LLP YVE+RRH+R WVHHVDAVTALA+SPDG +YS SWDRS+K W L
Sbjct: 132 TAADCLRALLLPGGGYVEVRRHKRRAWVHHVDAVTALALSPDGESMYSVSWDRSLKAWRL 191
Query: 210 PGFRCVESXXXXXXXXXXXXXVSPDGRVYTGSADKKIKAWTRGPGQRKHALVGTMERHRS 269
PG RC ES +PDG VYT SAD +KAW R GQ+K +LV MERH +
Sbjct: 192 PGLRCAESVAAAHDDAINAVVAAPDGHVYTASADGTVKAWRRRTGQKKLSLVCVMERHGA 251
Query: 270 AVNALALGANGKVLYSGACDRSVVVWESAXXXXXX-----MEATGTLRGHARAILCLAAA 324
AVNALALG G+VLYSGACDRSVV WE++ M AT TLRGHARA+LCLAA
Sbjct: 252 AVNALALGGGGRVLYSGACDRSVVAWENSAGAGAGGADVRMVATATLRGHARAVLCLAAD 311
Query: 325 GELVCSGSADRTVRVWRRGGAENNGYTCLAVMESHGAAVKSLALVRXXXX-------XXX 377
G++VCSGSADRTVRVWRRG YTCLAV++ HG AVKSLAL R
Sbjct: 312 GDVVCSGSADRTVRVWRRGA--TAAYTCLAVLDGHGGAVKSLALARGGAGCDRCCACHVE 369
Query: 378 XXXXXXXXALVCSGALDGDVKIWSVFI 404
ALVCSG+LD DVK+W V +
Sbjct: 370 ESSSCSCAALVCSGSLDCDVKLWRVTV 396
>Os04g0481600 WD-40 repeat containing protein
Length = 470
Score = 208 bits (530), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 185/313 (59%), Gaps = 29/313 (9%)
Query: 113 GGLLLSSHQDGKIRAWRAGSRRRDGETRPQLVLRAVLPTAVDRLRTCLLPWSYVEIRRHR 172
G ++ HQDG++R WR SR D +L L A LPT DRLR +P ++V +RRH
Sbjct: 162 GKAAVTGHQDGRLRLWRMSSRAPD-----RLRLAAALPTVSDRLRRFPVPSNHVTVRRHH 216
Query: 173 RCTWVHHVDAVTALAVSPDGALLYSASWDRSIKVWSLPGFRCVESXXXXXXXXXXXXXVS 232
R W+ H DAV+ +A S DG LL+S SWD+++KVW++P RC++S V+
Sbjct: 217 RRLWIEHADAVSGVAASADGRLLFSVSWDKTLKVWAVPSLRCLQS-LPAHDDAVNAVAVA 275
Query: 233 PDGRVYTGSADKKIKAW------------TRGPGQRK-HALVGTMERHRSAVNALALGAN 279
DG VYT SAD++++ W +R PG++ + LV T+ RH +AVNA+A+G
Sbjct: 276 HDGTVYTASADRRVRVWAPRAPAAGPDRASRRPGKKPAYHLVATLSRHAAAVNAVAVGCG 335
Query: 280 GKVLYSGACDRSVVVWESAXXXXXXMEATGTLRGHARAILCL------AAAGELVCSGSA 333
G+VLYSG DR VVVWE M A G LRGH RA+L + AA G LV SG+A
Sbjct: 336 GQVLYSGGNDRCVVVWER-EDSASHMVAVGALRGHRRAVLSVACAAGDAADGALVVSGAA 394
Query: 334 DRTVRVWRRGGAENNGYTCLAVMESHGAAVKSL--ALVRXXXXXXXXXXXXXXXALVCSG 391
D+TVR WRR GA+ GY C+AV++ HG+AV+S+ ALV VCS
Sbjct: 395 DQTVRAWRR-GADGRGYYCVAVIDGHGSAVRSVAAALVTAQKKRRADDDGGDEEWRVCSA 453
Query: 392 ALDGDVKIWSVFI 404
+ DG+V++WS+ +
Sbjct: 454 SFDGEVRLWSLRV 466
>Os03g0738700 WD40-like domain containing protein
Length = 489
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 125/364 (34%), Positives = 170/364 (46%), Gaps = 56/364 (15%)
Query: 56 DSLYIASSDGSIRLWALDGARRSQEEQQQDDGCXXXXXXXXXXXXXXXXXXLLATGNGGL 115
D+LY S +IR+W +Q+D G +G
Sbjct: 128 DTLYTGSDSKNIRVW----------RKQKDSGGFKSSSGLVKAIVI----------SGER 167
Query: 116 LLSSHQDGKIRAWRA----GSRRRDGETRPQLVLRAVLPTAVDRLRTCLLPWSYVEIRRH 171
+ + HQDGKIR W+ G +R G LP D LR L P +YVE+R++
Sbjct: 168 IFTGHQDGKIRVWKVSPKNGLHKRVGS----------LPRLRDFLRGSLNPSNYVEVRKN 217
Query: 172 RRCTWVHHVDAVTALAVSPDG-ALLYSASWDRSIKVWSLPGFRCVESXXXXXXXXXXXXX 230
R W+ H DAV+ L+ + LLYS SWDR+ KVW + +C+ES
Sbjct: 218 RTALWIRHSDAVSCLSPTDSAQGLLYSGSWDRTFKVWRINDSKCLESVVAHDDNVNAIVA 277
Query: 231 VSPDGRVYTGSADKKIKAWTR---GPGQRKHALVGTMERHRSAVNALALGANGKVLYSGA 287
DG V+TGSAD +K W R G G KH V T+ + AVNALA+ A VLY G+
Sbjct: 278 AF-DGLVFTGSADGTVKVWKRELQGKGT-KHVAVQTLLKQEHAVNALAVSAVAPVLYCGS 335
Query: 288 CDRSVVVWESAXXXXXXMEATGTLRGHARAILCLAAAGELVCSGSADRTVRVWRRGGAEN 347
D V WE + G LRGH +A+ CLAAAG L+ SGSAD T+ VWRR G
Sbjct: 336 SDGLVNFWEGERH----LVHGGVLRGHKKAVFCLAAAGSLLLSGSADNTIYVWRRDGGV- 390
Query: 348 NGYTCLAVMESHGAAVKSLALVRXXXXXXXXXXXXXXXA---------LVCSGALDGDVK 398
++CL+V+ H ++ LA+V + +V SG+LD +K
Sbjct: 391 --HSCLSVLTGHTEPIRCLAIVEDNKDNAAVPVDAVDSSFASGSSTRWIVYSGSLDKSIK 448
Query: 399 IWSV 402
+W V
Sbjct: 449 VWRV 452
>Os12g0594000 WD40-like domain containing protein
Length = 465
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 150/296 (50%), Gaps = 21/296 (7%)
Query: 114 GLLLSSHQDGKIRAWRAGSRRRDGETRPQLVLR-AVLPTAVDRLRTCLLPWSYVEIRRHR 172
G + + HQDGK+R WRA + P + R LP D LR+ + P YVE RR
Sbjct: 143 GRIYTGHQDGKVRVWRASA------DDPAVHRRVGSLPGLGDVLRSAVRPSRYVETRRRH 196
Query: 173 RCTWVHHVDAVTALAVSPDGALLYSASWDRSIKVWSLPGFRCVESXXXXXXXXXXXXXVS 232
W+ H DAV+ L++ LLYS SWD++ KVW + RC+ES
Sbjct: 197 SALWLRHFDAVSCLSLDAAAGLLYSGSWDKTFKVWRVSDSRCLESVRAHDDAVNTVAAAG 256
Query: 233 PDGRVYTGSADKKIKAWTRGPGQ---RKHALVGTMERHRSAVNALALGANGKVLYSGACD 289
D V+TGSAD +K W R PG+ +HA+ + + SAV A+A+ A +V+Y G+ D
Sbjct: 257 FDALVFTGSADGAVKVWRREPGKGGATRHAMERVLRKGESAVTAIAVAAEARVVYVGSSD 316
Query: 290 RSVVVWE---SAXXXXXXMEATGTLRGHARAILCLAAAGELVCSGSADRTVRVWRRGGAE 346
+V W+ G LRGH A+LCLA AG +V SGSADRT+ VWRR E
Sbjct: 317 GAVTHWQWRRGGAGVAGPPRNGGALRGHRMAVLCLAVAGRVVVSGSADRTISVWRR--EE 374
Query: 347 NNGYTCLAVMESHGAAVKSLALVRXXXXXXXXXXXXXXXALVCSGALDGDVKIWSV 402
+ LAV+ H VK +A+ +V SG+LDG VK+W V
Sbjct: 375 GADHARLAVLAGHTGPVKCVAM------DEEDDTAGDKRWVVYSGSLDGSVKVWRV 424
>Os03g0625300 WD40-like domain containing protein
Length = 493
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 152/308 (49%), Gaps = 27/308 (8%)
Query: 108 LATGNGGLLLSSHQDGKIRAWRAGSRRRDGETRPQLVLR-AVLPTAVDRLRTCLLPWSYV 166
+ + G + + HQDGK+R WRA + P + R LP D +R+ + P SYV
Sbjct: 151 IVVADDGRIFTGHQDGKVRVWRADA------GDPAVHRRVGSLPRLADYVRSSVNPSSYV 204
Query: 167 EIRRHRRC----TWVHHVDAVTALAVSPDGALLYSASWDRSIKVWSLPGFRCVESXXXXX 222
E R RR W+ H DAV+ L++ LLYSASWD S KVW + RC+ES
Sbjct: 205 ETPRRRRGRRREVWLRHSDAVSCLSLDEGAGLLYSASWDGSFKVWRVSDSRCLESVCAHD 264
Query: 223 XXXXXXXXVSPDGRVYTGSADKKIKAWTR--------GPGQRKHALVGTMERHRSAVNAL 274
DG V+TGSAD +K W R G + +H L + SAV A+
Sbjct: 265 DAINTVAAAGFDGVVFTGSADGTVKVWRREEEPAASGGEAKTRHVLETVLREDESAVTAI 324
Query: 275 ALGANGKVLYSGACDRSVVVWESAXXXXXXMEATGTLRGHARAILCLAAAGELVCSGSAD 334
A+ A G+V+Y G+ D V W G LR H A++CLA AG +V SGSAD
Sbjct: 325 AVSAEGRVVYVGSSDGDVTYWH---WIDGEARYGGALRAHGTAVMCLAVAGNVVVSGSAD 381
Query: 335 RTVRVWRRGGAENNGYTCLAVMESHGAAVKSLALVRXXXXXXXXXXXXXXXALVCSGALD 394
RT+ WRRGG E ++ LAV+ H VK +A+ +V SG+LD
Sbjct: 382 RTLCAWRRGGGE---HSRLAVLAGHTGPVKCVAV--DEEETSSCSSDGERRFVVYSGSLD 436
Query: 395 GDVKIWSV 402
G VK+W +
Sbjct: 437 GSVKVWRI 444
>Os01g0232200
Length = 571
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 110/238 (46%), Gaps = 18/238 (7%)
Query: 178 HHVDAVTALAVSPDGALLYSASWDRSIKVWSLPGFRCVESXXXXXXXXXXXXXVSPDGRV 237
HH D V+ L + LLY+AS D ++K W L C +S DG +
Sbjct: 257 HHRDTVSCLVLHAVAGLLYTASHDHTVKAWKLSDGSCADSFVAHDGAINAMLINEADGCI 316
Query: 238 YTGSADKKIKAWTRGPGQRKHALVGTMERHRSAVNALAL--------GANGKVLYSGACD 289
+TGSAD +K W R G HAL+ + S VNAL L LY+G+ D
Sbjct: 317 FTGSADGTVKMWRRVYGGTTHALIIALRSELSPVNALTLCHAAAATGATRRCFLYAGSSD 376
Query: 290 RSVVVWESAXXXXXXMEATGTLRGHARAILCLAA--AGELVCSGSADRTVRVWRR-GGAE 346
V VWE A G L+GH A+ CLA+ G +V SGS D T+RVWRR G
Sbjct: 377 GYVNVWEKEASAGRPAHA-GFLKGHRLAVFCLASGCGGRVVVSGSEDATMRVWRRDGKGG 435
Query: 347 NNGYTCLAVMESHGAAVKSLALVRXXXXXXXXXXXXXXXALVCSGALDGDVKIWSVFI 404
+ +TCLAV+E H V+ LA+ +V S LD VK+W + +
Sbjct: 436 STSHTCLAVIEGHRGPVRCLAV------GGGEAGDVEGSMVVYSAGLDKSVKVWRIRV 487
>Os01g0946100 WD40-like domain containing protein
Length = 431
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 122/232 (52%), Gaps = 14/232 (6%)
Query: 113 GGLLLSSHQDGKIRAWRAGSRRRDGETRPQLVLRAVLPTAVDRLRTCLLPWSYVEIRRHR 172
GG + S+HQDG++R WR R + L A LPT D L SYV+ RR+
Sbjct: 126 GGRVFSAHQDGRVRVWRVSRRSENA-----FKLVAALPTTRDYLGKIFRHASYVQTRRNH 180
Query: 173 RCTWVHHVDAVTALAVSPDGALLYSASWDRSIKVWSLPGFRCVESXXXXXXXXXXXXXVS 232
R W+ H D+++ LAV DG ++YS SWD+++KVW + +C+ES S
Sbjct: 181 RRLWIEHADSISCLAVH-DG-VVYSGSWDKTLKVWRISDLKCLESIHAHDDAINAVAADS 238
Query: 233 PDGRVYTGSADKKIKAWTRGPGQRKHALVGTM-ERHRSAVNALALGANG--KVLYSGACD 289
G +Y+ SAD +KAW G G+ H L G + R + NAL A+ + +Y+ D
Sbjct: 239 --GTIYSASADGHVKAW--GKGKAAHFLQGILISRDGVSWNALVASADAGARRVYAAGSD 294
Query: 290 RSVVVWESAXXXXXXMEATGTLRGHARAILCLAAAGELVCSGSADRTVRVWR 341
VV W+ + ++ H A+LCL AG+LV +GSAD+T+ +WR
Sbjct: 295 GHVVGWDRVGGRGSRWSLSCDVKAHDMAVLCLCVAGDLVFTGSADKTIGLWR 346
>Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
(WD-repeat protein BIG-3)
Length = 324
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 30/178 (16%)
Query: 231 VSPDGRVY-TGSADKKIKAWTRGPGQRKHALVGTMERHRSAVNALALGANGKVLYSGACD 289
SPDGR+ + SADK ++ W+ + V + H V+ LA +G+++ S + D
Sbjct: 27 FSPDGRLLASASADKLLRVWST---SDLASPVAELAGHGEGVSDLAFSPDGRLIASASDD 83
Query: 290 RSVVVWE----SAXXXXXXMEATGTLRGHARAILCLAAA--GELVCSGSADRTVRVWR-R 342
R+V +W+ TL GH CLA + G ++ SGS D TVRVW R
Sbjct: 84 RTVRIWDLGDGGGGGGGGEPRLMKTLSGHTNYAFCLAFSPHGNMLASGSFDETVRVWEVR 143
Query: 343 GGAENNGYTCLAVMESHGAAVKSLALVRXXXXXXXXXXXXXXXALVCSGALDGDVKIW 400
G CL V+ +H V S+ R A++ SG+ DG +IW
Sbjct: 144 SG------RCLRVLPAHSEPVTSVDFNRDG-------------AMIVSGSYDGLCRIW 182
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,200,666
Number of extensions: 487307
Number of successful extensions: 2228
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 2089
Number of HSP's successfully gapped: 13
Length of query: 407
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 304
Effective length of database: 11,657,759
Effective search space: 3543958736
Effective search space used: 3543958736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)