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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0481600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD-40 repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.08 (0.0757) R2 : 0.298
β1 : -2.69 (0.409) R2dD : 0.21 R2D : -0.175
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.21 (0.244) R2dE : 0.335 R2E : 0.193
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.18 (1.31) R2dD*E : 0.135 R2D*E : -0.0946
γ1 : -0.546 (0.175) R2dN8 : 0.034 R2N8 : -0.082
σ : 1.21
deviance : 679.68
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.54
memory length : 1062
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.83
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
674.68 1.22 5.1 -2.81 0.582 3.51 -1.61 -8.41 -0.598 16.2 19.25 853 6.08 --
722.93 1.25 4.86 -1.04 0.205 2.86 -0.702 -- 0.0188 13.4 19.31 1056 7.62 --
675.81 1.21 5.11 -2.78 0.425 3.4 -- -7.61 -0.609 18.4 19.37 945 6.1 --
720.86 1.25 4.9 -0.977 0.602 3.29 -- -- -0.0512 17.4 18 1003 7.58 --
679.68 1.21 5.08 -2.69 -- 3.21 -- -7.18 -0.546 -- 19.54 1062 6.83 --
909.62 1.41 4.73 -0.171 0.762 -- -0.168 -- 0.558 5.35 -- -- -- --
909.68 1.41 4.73 -0.171 0.761 -- -- -- 0.559 5.28 -- -- -- --
723.93 1.25 4.88 -1.04 -- 2.91 -- -- -0.0374 -- 18.38 1114 8.11 --
743.53 1.27 4.85 -- 0.436 2.81 -- -- 0.112 15.6 19.14 938 7.31 --
939.89 1.43 4.74 -0.145 -- -- -- -- 0.578 -- -- -- -- --
910.45 1.41 4.73 -- 0.758 -- -- -- 0.578 5.29 -- -- -- --
746.36 1.27 4.84 -- -- 2.5 -- -- 0.115 -- 20.24 1045 7.33 --
940.45 1.43 4.74 -- -- -- -- -- 0.594 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 674.98 radiation 1 43200 > th dose independent rect. 18 11
2 675.02 temperature 20 720 > th dose dependent rect. 18 15
5 678.58 radiation 1 43200 > th dose independent rect. 18 1
16 679.36 temperature 20 1440 > th dose dependent rect. 18 1
21 683.76 temperature 30 720 < th dose dependent rect. 17 15
22 683.84 radiation 1 43200 < th dose independent rect. 18 11
29 685.54 wind 3 43200 > th dose dependent rect. 8 8
30 685.67 radiation 1 14400 > th dose independent rect. 18 13
32 686.15 wind 3 43200 > th dose dependent rect. 9 6
36 686.32 wind 9 43200 < th dose dependent rect. 8 7
41 686.66 radiation 1 43200 < th dose independent rect. 18 2
48 686.80 radiation 1 43200 < th dose independent rect. 18 7
54 687.06 humidity 80 43200 < th dose independent rect. 21 1
59 687.55 wind 5 43200 > th dose dependent rect. 5 12
67 687.95 temperature 20 720 > th dose dependent sin 11 NA
75 688.32 radiation 1 14400 < th dose independent rect. 18 13
89 688.95 wind 3 43200 < th dose independent rect. 9 1
98 689.40 wind 5 43200 > th dose independent rect. 5 12
100 689.44 wind 5 43200 < th dose independent rect. 5 12
105 689.60 wind 5 43200 > th dose independent rect. 8 9
111 689.72 temperature 20 1440 > th dose dependent rect. 6 2
113 689.76 wind 3 43200 > th dose independent rect. 9 1
120 689.94 wind 5 43200 > th dose independent rect. 9 7
121 689.96 wind 5 43200 < th dose independent rect. 8 8
138 690.39 wind 5 43200 > th dose dependent sin 1 NA
154 690.82 radiation 1 14400 > th dose independent rect. 5 3
159 691.02 radiation 1 14400 < th dose independent rect. 5 3
185 691.52 humidity 80 43200 > th dose independent rect. 21 2
193 691.65 wind 5 43200 > th dose independent sin 0 NA
202 691.75 wind 5 43200 < th dose independent sin 0 NA
216 692.00 temperature 30 720 < th dose dependent sin 12 NA
234 692.25 wind 5 43200 > th dose independent rect. 5 16
238 692.31 wind 9 43200 < th dose dependent rect. 9 3
260 692.53 wind 5 43200 < th dose independent rect. 5 16
296 692.90 wind 9 43200 < th dose dependent rect. 9 1
310 693.10 radiation 1 14400 < th dose independent rect. 24 8
318 693.12 radiation 1 14400 < th dose independent rect. 2 6
378 693.55 wind 7 43200 < th dose independent sin 3 NA
391 693.72 wind 5 43200 < th dose dependent rect. 9 1
400 693.77 wind 7 43200 > th dose independent sin 3 NA
404 693.78 wind 1 43200 > th dose dependent rect. 9 1
412 693.87 wind 3 43200 < th dose independent rect. 9 3
525 694.81 radiation 1 14400 < th dose dependent rect. 18 18
536 694.97 radiation 1 14400 > th dose independent sin 9 NA
540 695.00 wind 9 43200 < th dose dependent rect. 11 1
622 695.56 radiation 1 14400 < th dose independent sin 9 NA
632 695.60 radiation 1 14400 < th dose dependent rect. 5 3
748 696.36 wind 1 43200 > th dose dependent rect. 11 1
800 696.73 temperature 30 1440 < th dose dependent rect. 18 1
820 696.81 radiation 1 14400 < th dose dependent rect. 2 6
822 696.82 wind 5 14400 > th dose independent rect. 11 1
828 696.85 temperature 20 4320 > th dose dependent rect. 6 13
835 696.92 humidity 80 43200 < th dose dependent rect. 21 12
879 697.06 humidity 50 43200 < th dose dependent rect. 8 3
984 697.51 wind 5 43200 < th dose independent rect. 9 21