BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0481600 Os04g0481600|J065166H17
(470 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0481600 WD-40 repeat containing protein 514 e-146
Os02g0740900 WD-40 repeat containing protein 142 4e-34
Os06g0238700 WD40-like domain containing protein 130 2e-30
Os03g0738700 WD40-like domain containing protein 100 2e-21
Os12g0594000 WD40-like domain containing protein 92 6e-19
Os03g0625300 WD40-like domain containing protein 73 5e-13
Os01g0946100 WD40-like domain containing protein 65 1e-10
>Os04g0481600 WD-40 repeat containing protein
Length = 470
Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust.
Identities = 287/470 (61%), Positives = 287/470 (61%)
Query: 1 MRLLPRLCMXXXXXXXXXXXXXXXXXXXKQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MRLLPRLCM KQQ
Sbjct: 1 MRLLPRLCMATGDSAAAAGEGDSSNSGSKQQAAAVSSSSSTVSTSSSAAAAAVSEASSSM 60
Query: 61 XXXXXXXXXDVTGSMSASLAASFAHVTTLCPLSTXXXXXXXXXXXXXDYSXXXXXXXXXX 120
DVTGSMSASLAASFAHVTTLCPLST DYS
Sbjct: 61 SLPSLPSLSDVTGSMSASLAASFAHVTTLCPLSTAAAAASAAAVAAADYSVHGGGGLVVV 120
Query: 121 XXXXXXXXLHDVFTMEATSTSDMADDTSAAGSVKCVAHLHGGKAAVTGHQDGRLRLWRMS 180
LHDVFTMEATSTSDMADDTSAAGSVKCVAHLHGGKAAVTGHQDGRLRLWRMS
Sbjct: 121 VARPAAVVLHDVFTMEATSTSDMADDTSAAGSVKCVAHLHGGKAAVTGHQDGRLRLWRMS 180
Query: 181 SXXXXXXXXXXXXXTVSDRLRRFPVPSNHVTVRRHHRRLWIEHXXXXXXXXXXXXXRLLF 240
S TVSDRLRRFPVPSNHVTVRRHHRRLWIEH RLLF
Sbjct: 181 SRAPDRLRLAAALPTVSDRLRRFPVPSNHVTVRRHHRRLWIEHADAVSGVAASADGRLLF 240
Query: 241 SVSWDKTLKVWAVPSLRCLQSLPXXXXXXXXXXXXXXGTVYTASADXXXXXXXXXXXXXX 300
SVSWDKTLKVWAVPSLRCLQSLP GTVYTASAD
Sbjct: 241 SVSWDKTLKVWAVPSLRCLQSLPAHDDAVNAVAVAHDGTVYTASADRRVRVWAPRAPAAG 300
Query: 301 XXXXXXXXGKKPAYHLVATLSRHXXXXXXXXXGCGGQVLYSGGNDRCVVVWEREDSASHM 360
GKKPAYHLVATLSRH GCGGQVLYSGGNDRCVVVWEREDSASHM
Sbjct: 301 PDRASRRPGKKPAYHLVATLSRHAAAVNAVAVGCGGQVLYSGGNDRCVVVWEREDSASHM 360
Query: 361 VAVGALRGHRRXXXXXXXXXXXXXXXXXXXXXXXXQTVRAWRRGADGRGYYCVAVIDGHG 420
VAVGALRGHRR QTVRAWRRGADGRGYYCVAVIDGHG
Sbjct: 361 VAVGALRGHRRAVLSVACAAGDAADGALVVSGAADQTVRAWRRGADGRGYYCVAVIDGHG 420
Query: 421 SAVRSVAAALVTAQKKRRADDDGGDEEWRVCSASFDGEVRLWSLRVAAAS 470
SAVRSVAAALVTAQKKRRADDDGGDEEWRVCSASFDGEVRLWSLRVAAAS
Sbjct: 421 SAVRSVAAALVTAQKKRRADDDGGDEEWRVCSASFDGEVRLWSLRVAAAS 470
>Os02g0740900 WD-40 repeat containing protein
Length = 407
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 145/327 (44%), Gaps = 37/327 (11%)
Query: 152 SVKCVAHLHGGKAAVTGHQDGRLRLWRMSS-----XXXXXXXXXXXXXTVSDRLRRFPVP 206
SVK + G ++ HQDG++R WR S T DRLR +P
Sbjct: 103 SVKSLLATGNGGLLLSSHQDGKIRAWRAGSRRRDGETRPQLVLRAVLPTAVDRLRTCLLP 162
Query: 207 SNHVTVRRHHRRLWIEHXXXXXXXXXXXXXRLLFSVSWDKTLKVWAVPSLRCLQSLPXX- 265
++V +RRH R W+ H LL+S SWD+++KVW++P RC++S+
Sbjct: 163 WSYVEIRRHRRCTWVHHVDAVTALAVSPDGALLYSASWDRSIKVWSLPGFRCVESIAAAH 222
Query: 266 XXXXXXXXXXXXGTVYTASADXXXXXXXXXXXXXXXXXXXXXXGKKPAYHLVATLSRHXX 325
G VYT SAD G++ + LV T+ RH
Sbjct: 223 DDAINALAVSPDGRVYTGSAD------------KKIKAWTRGPGQRK-HALVGTMERHRS 269
Query: 326 XXXXXXXGCGGQVLYSGGNDRCVVVWEREDSA-SHMVAVGALRGHRRXXXXXXXXXXXXX 384
G G+VLYSG DR VVVWE M A G LRGH R
Sbjct: 270 AVNALALGANGKVLYSGACDRSVVVWESAGGGDGGMEATGTLRGHAR------AILCLAA 323
Query: 385 XXXXXXXXXXXQTVRAWRR-GADGRGYYCVAVIDGHGSAVRSVAAALVTAQKKRRADDDG 443
+TVR WRR GA+ GY C+AV++ HG+AV+S+ ALV + DDDG
Sbjct: 324 AGELVCSGSADRTVRVWRRGGAENNGYTCLAVMESHGAAVKSL--ALVRGGR----DDDG 377
Query: 444 G----DEEWRVCSASFDGEVRLWSLRV 466
VCS + DG+V++WS+ +
Sbjct: 378 SCSSEGSSALVCSGALDGDVKIWSVFI 404
>Os06g0238700 WD40-like domain containing protein
Length = 495
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/352 (32%), Positives = 149/352 (42%), Gaps = 41/352 (11%)
Query: 136 EATSTSDMAD----DTSAAGS-VKCVAHLHGGKAAVTGHQDGRLRLWRMSSXXXXXXXXX 190
E+TS+S + + GS VKC+A G V+ HQDG +R+WR +
Sbjct: 71 ESTSSSSQGEVSRSTVAVTGSPVKCLAAT--GDGLVSSHQDGTIRVWRHAGGRRRLALRA 128
Query: 191 XXXXTVSDRLRRFPVPSN-HVTVRRHHRRLWIEHXXXXXXXXXXXXXRLLFSVSWDKTLK 249
T +D LR +P +V VRRH RR W+ H ++SVSWD++LK
Sbjct: 129 VLP-TAADCLRALLLPGGGYVEVRRHKRRAWVHHVDAVTALALSPDGESMYSVSWDRSLK 187
Query: 250 VWAVPSLRCLQSLPXX-XXXXXXXXXXXXGTVYTASADXXXXXXXXXXXXXXXXXXXXXX 308
W +P LRC +S+ G VYTASAD
Sbjct: 188 AWRLPGLRCAESVAAAHDDAINAVVAAPDGHVYTASAD------------GTVKAWRRRT 235
Query: 309 GKKPAYHLVATLSRHXXXXXXXXXGCGGQVLYSGGNDRCVVVWEREDSAS------HMVA 362
G+K LV + RH G GG+VLYSG DR VV WE A MVA
Sbjct: 236 GQKK-LSLVCVMERHGAAVNALALGGGGRVLYSGACDRSVVAWENSAGAGAGGADVRMVA 294
Query: 363 VGALRGHRRXXXXXXXXXXXXXXXXXXXXXXXXQTVRAWRRGADGRGYYCVAVIDGHGSA 422
LRGH R +TVR WRRGA Y C+AV+DGHG A
Sbjct: 295 TATLRGHAR------AVLCLAADGDVVCSGSADRTVRVWRRGATA-AYTCLAVLDGHGGA 347
Query: 423 VRSVAAALVTAQKKR-----RADDDGGDEEWRVCSASFDGEVRLWSLRVAAA 469
V+S+A A A R + VCS S D +V+LW + V+ A
Sbjct: 348 VKSLALARGGAGCDRCCACHVEESSSCSCAALVCSGSLDCDVKLWRVTVSEA 399
>Os03g0738700 WD40-like domain containing protein
Length = 489
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 130/328 (39%), Gaps = 35/328 (10%)
Query: 148 SAAGSVKCVAHLHGGKAAVTGHQDGRLRLWRMSSXXXXXXXXXXXXXTVSDRLRRFPVPS 207
S++G VK + + G+ TGHQDG++R+W++S + D LR PS
Sbjct: 153 SSSGLVKAI--VISGERIFTGHQDGKIRVWKVSPKNGLHKRVGSLPR-LRDFLRGSLNPS 209
Query: 208 NHVTVRRHHRRLWIEHXXXXXXXXXXXXXR-LLFSVSWDKTLKVWAVPSLRCLQSLPXXX 266
N+V VR++ LWI H + LL+S SWD+T KVW + +CL+S+
Sbjct: 210 NYVEVRKNRTALWIRHSDAVSCLSPTDSAQGLLYSGSWDRTFKVWRINDSKCLESVVAHD 269
Query: 267 XXXXXXXXXXXGTVYTASADXXXXXXXXXXXXXXXXXXXXXXGKKPAYHLVATLSRHXXX 326
G V+T SAD GK + V TL +
Sbjct: 270 DNVNAIVAAFDGLVFTGSAD-----------GTVKVWKRELQGKGTKHVAVQTLLKQEHA 318
Query: 327 XXXXXXGCGGQVLYSGGNDRCVVVWEREDSASHMVAVGALRGHRRXXXXXXXXXXXXXXX 386
VLY G +D V WE E H+V G LRGH++
Sbjct: 319 VNALAVSAVAPVLYCGSSDGLVNFWEGE---RHLVHGGVLRGHKK------AVFCLAAAG 369
Query: 387 XXXXXXXXXQTVRAWRRGADGRGYYCVAVIDGHGSAVRSVA-------AALVTAQKKRRA 439
T+ WRR DG + C++V+ GH +R +A A V +
Sbjct: 370 SLLLSGSADNTIYVWRR--DGGVHSCLSVLTGHTEPIRCLAIVEDNKDNAAVPVDAVDSS 427
Query: 440 DDDGGDEEWRVCSASFDGEVRLWSLRVA 467
G W V S S D +++W RVA
Sbjct: 428 FASGSSTRWIVYSGSLDKSIKVW--RVA 453
>Os12g0594000 WD40-like domain containing protein
Length = 465
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 122/326 (37%), Gaps = 31/326 (9%)
Query: 142 DMADDTSAAGSVKCVAHLHGGKAAVTGHQDGRLRLWRMSSXXXXXXXXXXXXXTVSDRLR 201
+ A S +G VK + G+ TGHQDG++R+WR S+ + D LR
Sbjct: 123 EFAGFRSGSGLVKAIVVAGDGRI-YTGHQDGKVRVWRASADDPAVHRRVGSLPGLGDVLR 181
Query: 202 RFPVPSNHVTVRRHHRRLWIEHXXXXXXXXXXXXXRLLFSVSWDKTLKVWAVPSLRCLQS 261
PS +V RR H LW+ H LL+S SWDKT KVW V RCL+S
Sbjct: 182 SAVRPSRYVETRRRHSALWLRHFDAVSCLSLDAAAGLLYSGSWDKTFKVWRVSDSRCLES 241
Query: 262 L-PXXXXXXXXXXXXXXGTVYTASADXXXXXXXXXXXXXXXXXXXXXXGKKPAYHLVATL 320
+ V+T SAD G + + L
Sbjct: 242 VRAHDDAVNTVAAAGFDALVFTGSAD----------GAVKVWRREPGKGGATRHAMERVL 291
Query: 321 SRHXXXXXXXXXGCGGQVLYSGGNDRCVVVWEREDSASHMVAV----GALRGHRRXXXXX 376
+ +V+Y G +D V W+ + + GALRGHR
Sbjct: 292 RKGESAVTAIAVAAEARVVYVGSSDGAVTHWQWRRGGAGVAGPPRNGGALRGHR------ 345
Query: 377 XXXXXXXXXXXXXXXXXXXQTVRAWRRGADGRGYYCVAVIDGHGSAVRSVAAALVTAQKK 436
+T+ WRR +G + +AV+ GH V+ VA
Sbjct: 346 MAVLCLAVAGRVVVSGSADRTISVWRR-EEGADHARLAVLAGHTGPVKCVA--------M 396
Query: 437 RRADDDGGDEEWRVCSASFDGEVRLW 462
DD GD+ W V S S DG V++W
Sbjct: 397 DEEDDTAGDKRWVVYSGSLDGSVKVW 422
>Os03g0625300 WD40-like domain containing protein
Length = 493
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 127/329 (38%), Gaps = 27/329 (8%)
Query: 142 DMADDTSAAGSVKCVAHLHGGKAAVTGHQDGRLRLWRMSSXXXXXXXXXXXXXTVSDRLR 201
++A + +G VK + G+ TGHQDG++R+WR + ++D +R
Sbjct: 137 ELAGFRTGSGLVKAIVVADDGRI-FTGHQDGKVRVWRADAGDPAVHRRVGSLPRLADYVR 195
Query: 202 RFPVPSNHVTV----RRHHRRLWIEHXXXXXXXXXXXXXRLLFSVSWDKTLKVWAVPSLR 257
PS++V R R +W+ H LL+S SWD + KVW V R
Sbjct: 196 SSVNPSSYVETPRRRRGRRREVWLRHSDAVSCLSLDEGAGLLYSASWDGSFKVWRVSDSR 255
Query: 258 CLQSL-PXXXXXXXXXXXXXXGTVYTASADXXXXXXXXXXXXXXXXXXXXXXGKKPAYHL 316
CL+S+ G V+T SAD G+ H+
Sbjct: 256 CLESVCAHDDAINTVAAAGFDGVVFTGSAD------GTVKVWRREEEPAASGGEAKTRHV 309
Query: 317 VATLSRH-XXXXXXXXXGCGGQVLYSGGNDRCVVVWEREDSASHMVAVGALRGHRRXXXX 375
+ T+ R G+V+Y G +D V W D + GALR H
Sbjct: 310 LETVLREDESAVTAIAVSAEGRVVYVGSSDGDVTYWHWIDGEARY--GGALRAH------ 361
Query: 376 XXXXXXXXXXXXXXXXXXXXQTVRAWRRGADGRGYYCVAVIDGHGSAVRSVAAALVTAQK 435
+T+ AWRRG G + +AV+ GH V+ VA V ++
Sbjct: 362 GTAVMCLAVAGNVVVSGSADRTLCAWRRG--GGEHSRLAVLAGHTGPVKCVA---VDEEE 416
Query: 436 KRRADDDGGDEEWRVCSASFDGEVRLWSL 464
D G+ + V S S DG V++W +
Sbjct: 417 TSSCSSD-GERRFVVYSGSLDGSVKVWRI 444
>Os01g0946100 WD40-like domain containing protein
Length = 431
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 151 GSVKCVAHLHGGKAAVTGHQDGRLRLWRMSSXXXXXXXXXXXXXTVSDRLRRFPVPSNHV 210
GSVK +A G + HQDGR+R+WR+S T D L + +++V
Sbjct: 117 GSVKALAA--AGGRVFSAHQDGRVRVWRVSRRSENAFKLVAALPTTRDYLGKIFRHASYV 174
Query: 211 TVRRHHRRLWIEHXXXXXXXXXXXXXRLLFSVSWDKTLKVWAVPSLRCLQSLPXXXXXXX 270
RR+HRRLWIEH +++S SWDKTLKVW + L+CL+S+
Sbjct: 175 QTRRNHRRLWIEHADSISCLAVHDG--VVYSGSWDKTLKVWRISDLKCLESI-HAHDDAI 231
Query: 271 XXXXXXXGTVYTASAD 286
GT+Y+ASAD
Sbjct: 232 NAVAADSGTIYSASAD 247
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.131 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,948,560
Number of extensions: 349519
Number of successful extensions: 1454
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1420
Number of HSP's successfully gapped: 7
Length of query: 470
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 366
Effective length of database: 11,605,545
Effective search space: 4247629470
Effective search space used: 4247629470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)