FiT-DB / Search/ Help/ Sample detail

Os03g0625300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.8 (0.0407) R2 : 0.9
β1 : 1.17 (0.149) R2dD : 0.0137 R2D : 0.00551
β2 : 4.78 (0.115) R2dC : 0.533 R2C : 0.778
β3 : -2.98 (0.162) R2dE : 0.105 R2E : 0.352
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.288 (0.0868) R2dN8 : 0.00354 R2N8 : -0.00185
σ : 0.76
deviance : 266.22
__
_____
C
peak time of C : 10.9
E
wheather : radiation
threshold : 3.232
memory length : 51
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 15.3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
249.95 0.743 9.78 1.24 4.86 -3.12 -1.65 -3.7 0.338 10.9 2.02 40 15.7 --
268.48 0.763 9.79 1.17 4.88 -3.02 -1.04 -- 0.334 10.9 2.492 36 15.7 --
257.76 0.748 9.8 1.17 4.82 -2.99 -- -2.27 0.315 10.9 2.801 47 15.5 --
266.22 0.76 9.8 1.17 4.78 -2.98 -- -- 0.288 10.9 3.232 51 15.3 --
333.43 0.85 10 1.3 -- -5.97 -- -0.349 0.098 -- 20.16 88 9.37 --
413.77 0.954 9.76 1.26 6.03 -- -0.377 -- 0.318 10.3 -- -- -- --
414.34 0.953 9.76 1.24 6.03 -- -- -- 0.316 10.3 -- -- -- --
307.7 0.821 9.93 1.16 -- -5.67 -- -- 0.244 -- 14.54 14 8.42 --
301.07 0.808 9.84 -- 4.71 -3.08 -- -- 0.172 10.9 2.948 54 15.3 --
2626.49 2.39 9.92 1.15 -- -- -- -- 0.301 -- -- -- -- --
454.97 0.998 9.79 -- 6.02 -- -- -- 0.178 10.3 -- -- -- --
338.65 0.857 9.97 -- -- -5.7 -- -- 0.0593 -- 14.64 13 8.66 --
2661.35 2.41 9.95 -- -- -- -- -- 0.173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 255.38 radiation 1.0 30 < th dose dependent sin 22 NA
2 256.05 radiation 1.0 30 < th dose dependent rect. 5 15
3 256.08 radiation 1.0 30 < th dose dependent rect. 7 13
5 256.92 radiation 1.0 90 < th dose independent rect. 7 13
7 257.80 radiation 1.0 30 < th dose dependent rect. 11 9
11 258.14 radiation 1.0 90 < th dose independent rect. 9 11
13 258.16 radiation 1.0 30 < th dose dependent rect. 13 7
19 258.99 radiation 1.0 30 < th dose dependent rect. 15 5
32 260.23 radiation 1.0 30 < th dose independent sin 21 NA
45 262.01 radiation 1.0 90 < th dose independent rect. 17 3
113 269.37 precipitation 0.1 90 < th dose independent rect. 20 22
114 269.37 precipitation 0.1 90 < th dose dependent rect. 20 22
119 269.79 radiation 1.0 30 > th dose independent sin 22 NA
166 275.51 radiation 10.0 30 < th dose dependent sin 17 NA
218 281.22 wind 1.0 90 > th dose independent rect. 18 2
220 281.29 temperature 10.0 90 > th dose independent rect. 18 2
222 281.29 humidity 50.0 90 > th dose independent rect. 18 2
223 281.29 atmosphere 1010.0 90 < th dose independent rect. 18 2
225 281.29 radiation 20.0 90 < th dose independent rect. 18 2
228 281.29 temperature 10.0 90 > th dose independent rect. 20 22
230 281.30 wind 9.0 90 < th dose independent rect. 18 2
233 281.39 radiation 40.0 90 < th dose dependent rect. 18 2
240 281.52 atmosphere 995.0 90 > th dose independent rect. 18 2
246 282.18 wind 9.0 90 < th dose independent rect. 20 22
271 283.44 wind 9.0 90 < th dose dependent rect. 18 2
280 283.79 humidity 50.0 10 > th dose dependent rect. 18 2
285 284.07 humidity 60.0 10 > th dose independent rect. 18 2
304 285.20 precipitation 0.1 90 < th dose independent rect. 18 2
305 285.20 precipitation 0.1 90 < th dose dependent rect. 18 2
345 286.94 humidity 50.0 90 > th dose independent rect. 17 4
350 287.33 atmosphere 1015.0 90 < th dose dependent rect. 18 2
378 288.84 temperature 30.0 10 < th dose independent rect. 18 2
383 289.32 temperature 10.0 90 > th dose dependent rect. 18 2
407 290.90 radiation 10.0 14400 < th dose dependent rect. 19 2
413 291.30 humidity 50.0 14400 > th dose independent rect. 19 2
468 292.66 temperature 15.0 1440 > th dose independent rect. 19 2
478 292.79 temperature 30.0 1440 < th dose independent rect. 19 2
482 292.79 humidity 50.0 1440 > th dose independent rect. 19 2
484 292.79 atmosphere 995.0 1440 > th dose independent rect. 19 2
488 292.79 radiation 1.0 1440 < th dose independent rect. 19 2
508 292.79 temperature 10.0 1440 > th dose independent rect. 21 22
511 292.79 radiation 1.0 1440 < th dose dependent rect. 19 2
525 293.30 radiation 40.0 270 < th dose dependent rect. 15 5
615 295.96 temperature 15.0 270 > th dose independent rect. 16 4
628 296.39 atmosphere 1015.0 270 < th dose independent rect. 16 4
648 297.32 wind 9.0 270 < th dose independent rect. 16 4
653 297.58 radiation 1.0 30 > th dose independent rect. 5 13
684 298.07 wind 7.0 270 < th dose independent rect. 20 11
686 298.12 radiation 40.0 270 < th dose dependent rect. 20 11
689 298.25 wind 1.0 270 > th dose independent rect. 16 4
764 300.37 radiation 1.0 30 < th dose independent rect. 7 23
780 300.92 radiation 1.0 30 < th dose independent rect. 17 23
783 301.08 radiation 1.0 30 > th dose independent no NA NA
784 301.08 precipitation 0.1 270 < th dose independent rect. 20 11
840 301.08 precipitation 0.1 270 < th dose dependent rect. 20 11
845 301.12 radiation 1.0 30 < th dose independent no NA NA
846 301.12 radiation 1.0 30 < th dose independent rect. 11 21
852 301.12 radiation 1.0 30 < th dose independent rect. 13 23
853 301.12 radiation 1.0 30 < th dose independent rect. 15 23
858 301.44 atmosphere 995.0 90 > th dose independent rect. 20 22
861 301.50 radiation 1.0 30 < th dose independent rect. 15 21
867 301.60 radiation 1.0 30 < th dose independent rect. 13 19
902 301.96 radiation 1.0 30 < th dose independent rect. 15 17
912 301.99 temperature 10.0 270 > th dose independent rect. 20 11
913 301.99 temperature 30.0 270 < th dose independent rect. 20 11
914 301.99 humidity 50.0 270 > th dose independent rect. 20 11
916 301.99 atmosphere 995.0 270 > th dose independent rect. 20 11
917 301.99 radiation 40.0 270 < th dose independent rect. 20 11
918 301.99 temperature 10.0 270 > th dose independent rect. 7 13
919 301.99 atmosphere 1015.0 270 < th dose independent rect. 7 13
949 302.83 atmosphere 995.0 90 > th dose dependent rect. 18 2
956 302.94 atmosphere 995.0 270 > th dose independent rect. 20 20
993 304.09 wind 1.0 90 > th dose dependent rect. 18 2