BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0625300 Os03g0625300|Os03g0625300
         (493 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0625300  WD40-like domain containing protein                 756   0.0  
Os12g0594000  WD40-like domain containing protein                 457   e-129
Os03g0738700  WD40-like domain containing protein                 351   7e-97
Os02g0740900  WD-40 repeat containing protein                     180   3e-45
Os01g0946100  WD40-like domain containing protein                 172   5e-43
Os06g0238700  WD40-like domain containing protein                 169   4e-42
Os01g0232200                                                      165   8e-41
Os04g0481600  WD-40 repeat containing protein                     135   1e-31
>Os03g0625300 WD40-like domain containing protein
          Length = 493

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/493 (79%), Positives = 393/493 (79%)

Query: 1   MGSGHRKLIHLLRAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQTNDXXXXXXX 60
           MGSGHRKLIHLLRAEQ                                WQTND       
Sbjct: 1   MGSGHRKLIHLLRAEQAAAAASAASASFSPKSFSSSSASDDDGCSSSSWQTNDGAGGYGS 60

Query: 61  XXXXXXXXXXXXXXKSPWAAHLPXXXXXXXXXXXXXXXXXASLVKEDGHVYSLAAAGDVL 120
                         KSPWAAHLP                 ASLVKEDGHVYSLAAAGDVL
Sbjct: 61  AASSPSRCSASTPPKSPWAAHLPGLGGGGVGTGAGATGLVASLVKEDGHVYSLAAAGDVL 120

Query: 121 YTGTDSENVRVWRDRRELAGFRTGSGLVKAIVVADDGRIFTGHQDGKVRVWRADAGDPAV 180
           YTGTDSENVRVWRDRRELAGFRTGSGLVKAIVVADDGRIFTGHQDGKVRVWRADAGDPAV
Sbjct: 121 YTGTDSENVRVWRDRRELAGFRTGSGLVKAIVVADDGRIFTGHQDGKVRVWRADAGDPAV 180

Query: 181 HRRVGSLPRLADYVRSSVNPSSYVETPXXXXXXXXEVWLRHSDAVSCLSLDEGAGLLYSA 240
           HRRVGSLPRLADYVRSSVNPSSYVETP        EVWLRHSDAVSCLSLDEGAGLLYSA
Sbjct: 181 HRRVGSLPRLADYVRSSVNPSSYVETPRRRRGRRREVWLRHSDAVSCLSLDEGAGLLYSA 240

Query: 241 SWDGSFKVWRVSDSRCLESVCAHDDAINTVAAAGFDGVVFTGSADGTVKVWRREEEPAAS 300
           SWDGSFKVWRVSDSRCLESVCAHDDAINTVAAAGFDGVVFTGSADGTVKVWRREEEPAAS
Sbjct: 241 SWDGSFKVWRVSDSRCLESVCAHDDAINTVAAAGFDGVVFTGSADGTVKVWRREEEPAAS 300

Query: 301 GGEAKTRHVLETVLREDESAVTAIAVSAEGRVVYVGSSDGDVTYWHWIDGEARYGGALRA 360
           GGEAKTRHVLETVLREDESAVTAIAVSAEGRVVYVGSSDGDVTYWHWIDGEARYGGALRA
Sbjct: 301 GGEAKTRHVLETVLREDESAVTAIAVSAEGRVVYVGSSDGDVTYWHWIDGEARYGGALRA 360

Query: 361 HGTAVMCLXXXXXXXXXXXXDRTLCAWRRGGGEHSRLAVLAGHTGPVKCVAVDEEETSSC 420
           HGTAVMCL            DRTLCAWRRGGGEHSRLAVLAGHTGPVKCVAVDEEETSSC
Sbjct: 361 HGTAVMCLAVAGNVVVSGSADRTLCAWRRGGGEHSRLAVLAGHTGPVKCVAVDEEETSSC 420

Query: 421 SSDGERRFVVYSGSLDGSVKVWRISDIEPTNPPPRLPSPHVWKREDQPXXXXXXXXXXWS 480
           SSDGERRFVVYSGSLDGSVKVWRISDIEPTNPPPRLPSPHVWKREDQP          WS
Sbjct: 421 SSDGERRFVVYSGSLDGSVKVWRISDIEPTNPPPRLPSPHVWKREDQPAAATAAAARAWS 480

Query: 481 PYQTSEMNSVAAA 493
           PYQTSEMNSVAAA
Sbjct: 481 PYQTSEMNSVAAA 493
>Os12g0594000 WD40-like domain containing protein
          Length = 465

 Score =  457 bits (1177), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/397 (63%), Positives = 285/397 (71%), Gaps = 29/397 (7%)

Query: 104 VKEDGHVYSLAAAGDVLYTGTDSENVRVWRDRRELAGFRTGSGLVKAIVVADDGRIFTGH 163
           VKEDGHVYSLAAAG++LYTGTDS+NVRVWR RRE AGFR+GSGLVKAIVVA DGRI+TGH
Sbjct: 90  VKEDGHVYSLAAAGELLYTGTDSKNVRVWRHRREFAGFRSGSGLVKAIVVAGDGRIYTGH 149

Query: 164 QDGKVRVWRADAGDPAVHRRVGSLPRLADYVRSSVNPSSYVETPXXXXXXXXEVWLRHSD 223
           QDGKVRVWRA A DPAVHRRVGSLP L D +RS+V PS YVET          +WLRH D
Sbjct: 150 QDGKVRVWRASADDPAVHRRVGSLPGLGDVLRSAVRPSRYVET----RRRHSALWLRHFD 205

Query: 224 AVSCLSLDEGAGLLYSASWDGSFKVWRVSDSRCLESVCAHDDAINTVAAAGFDGVVFTGS 283
           AVSCLSLD  AGLLYS SWD +FKVWRVSDSRCLESV AHDDA+NTVAAAGFD +VFTGS
Sbjct: 206 AVSCLSLDAAAGLLYSGSWDKTFKVWRVSDSRCLESVRAHDDAVNTVAAAGFDALVFTGS 265

Query: 284 ADGTVKVWRREEEPAASGGEAKTRHVLETVLREDESAVTAIAVSAEGRVVYVGSSDGDVT 343
           ADG VKVWRRE      G    TRH +E VLR+ ESAVTAIAV+AE RVVYVGSSDG VT
Sbjct: 266 ADGAVKVWRREP-----GKGGATRHAMERVLRKGESAVTAIAVAAEARVVYVGSSDGAVT 320

Query: 344 YWHW------IDGEARYGGALRAHGTAVMCLXXXXXXXXXXXXDRTLCAWRR-GGGEHSR 396
           +W W      + G  R GGALR H  AV+CL            DRT+  WRR  G +H+R
Sbjct: 321 HWQWRRGGAGVAGPPRNGGALRGHRMAVLCLAVAGRVVVSGSADRTISVWRREEGADHAR 380

Query: 397 LAVLAGHTGPVKCVAVDEEETSSCSSDGERRFVVYSGSLDGSVKVWRISDIEPTNPPPRL 456
           LAVLAGHTGPVKCVA+DEE+ ++    G++R+VVYSGSLDGSVKVWR+S   P     R 
Sbjct: 381 LAVLAGHTGPVKCVAMDEEDDTA----GDKRWVVYSGSLDGSVKVWRVSST-PDAAAART 435

Query: 457 PSPHVWKREDQPXXXXXXXXXXWSPYQTSEMNSVAAA 493
           P+ H WK    P          W+PY  +      AA
Sbjct: 436 PA-HGWKATPSP-------LGAWTPYAATPARKRMAA 464
>Os03g0738700 WD40-like domain containing protein
          Length = 489

 Score =  351 bits (900), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 189/362 (52%), Positives = 244/362 (67%), Gaps = 30/362 (8%)

Query: 102 SLVKEDGHVYSLAAAGDVLYTGTDSENVRVWRDRRELAGFRTGSGLVKAIVVADDGRIFT 161
           SLV+E+GH+YSLAA  D LYTG+DS+N+RVWR +++  GF++ SGLVKAIV++ + RIFT
Sbjct: 112 SLVREEGHIYSLAAKTDTLYTGSDSKNIRVWRKQKDSGGFKSSSGLVKAIVISGE-RIFT 170

Query: 162 GHQDGKVRVWRADAGDPAVHRRVGSLPRLADYVRSSVNPSSYVETPXXXXXXXXEVWLRH 221
           GHQDGK+RVW+    +  +H+RVGSLPRL D++R S+NPS+YVE           +W+RH
Sbjct: 171 GHQDGKIRVWKVSPKN-GLHKRVGSLPRLRDFLRGSLNPSNYVEV----RKNRTALWIRH 225

Query: 222 SDAVSCLS-LDEGAGLLYSASWDGSFKVWRVSDSRCLESVCAHDDAINTVAAAGFDGVVF 280
           SDAVSCLS  D   GLLYS SWD +FKVWR++DS+CLESV AHDD +N + AA FDG+VF
Sbjct: 226 SDAVSCLSPTDSAQGLLYSGSWDRTFKVWRINDSKCLESVVAHDDNVNAIVAA-FDGLVF 284

Query: 281 TGSADGTVKVWRREEEPAASGGEAKTRHVLETVLREDESAVTAIAVSAEGRVVYVGSSDG 340
           TGSADGTVKVW+RE +         T+HV    L + E AV A+AVSA   V+Y GSSDG
Sbjct: 285 TGSADGTVKVWKRELQGKG------TKHVAVQTLLKQEHAVNALAVSAVAPVLYCGSSDG 338

Query: 341 DVTYWHWIDGEAR--YGGALRAHGTAVMCLXXXXXXXXXXXXDRTLCAWRRGGGEHSRLA 398
            V +W   +GE    +GG LR H  AV CL            D T+  WRR GG HS L+
Sbjct: 339 LVNFW---EGERHLVHGGVLRGHKKAVFCLAAAGSLLLSGSADNTIYVWRRDGGVHSCLS 395

Query: 399 VLAGHTGPVKCVAVDEEET-----------SSCSSDGERRFVVYSGSLDGSVKVWRISDI 447
           VL GHT P++C+A+ E+             SS +S    R++VYSGSLD S+KVWR+++ 
Sbjct: 396 VLTGHTEPIRCLAIVEDNKDNAAVPVDAVDSSFASGSSTRWIVYSGSLDKSIKVWRVAED 455

Query: 448 EP 449
            P
Sbjct: 456 AP 457
>Os02g0740900 WD-40 repeat containing protein
          Length = 407

 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 181/379 (47%), Gaps = 66/379 (17%)

Query: 109 HVYSLAAAGDVLYTGTDSENVRVWRDRRELAGFR-----------------------TGS 145
           +V +LA  GD LY  +   ++R+W     L G R                       T S
Sbjct: 47  YVSALAVDGDSLYIASSDGSIRLW----ALDGARRSQEEQQQDDGCSSSSSSTTVADTDS 102

Query: 146 GLVKAIVVADDGRIFTGHQDGKVRVWRADAGDPAVHRRVGS----------LPRLADYVR 195
            +   +   + G + + HQDGK+R WRA +      RR G           LP   D +R
Sbjct: 103 SVKSLLATGNGGLLLSSHQDGKIRAWRAGS-----RRRDGETRPQLVLRAVLPTAVDRLR 157

Query: 196 SSVNPSSYVETPXXXXXXXXEVWLRHSDAVSCLSLDEGAGLLYSASWDGSFKVWRVSDSR 255
           + + P SYVE            W+ H DAV+ L++     LLYSASWD S KVW +   R
Sbjct: 158 TCLLPWSYVEIRRHRRC----TWVHHVDAVTALAVSPDGALLYSASWDRSIKVWSLPGFR 213

Query: 256 CLESV-CAHDDAINTVAAAGFDGVVFTGSADGTVKVWRREEEPAASGGEAKTRHVLETVL 314
           C+ES+  AHDDAIN +A +  DG V+TGSAD  +K W R        G  + +H L   +
Sbjct: 214 CVESIAAAHDDAINALAVS-PDGRVYTGSADKKIKAWTR--------GPGQRKHALVGTM 264

Query: 315 REDESAVTAIAVSAEGRVVYVGSSDGDVTYWHWI---DGEARYGGALRAHGTAVMCLXXX 371
               SAV A+A+ A G+V+Y G+ D  V  W      DG     G LR H  A++CL   
Sbjct: 265 ERHRSAVNALALGANGKVLYSGACDRSVVVWESAGGGDGGMEATGTLRGHARAILCLAAA 324

Query: 372 XXXXXXXXXDRTLCAWRRGGGE---HSRLAVLAGHTGPVKCVAV---DEEETSSCSSDGE 425
                    DRT+  WRRGG E   ++ LAV+  H   VK +A+     ++  SCSS+G 
Sbjct: 325 GELVCSGSADRTVRVWRRGGAENNGYTCLAVMESHGAAVKSLALVRGGRDDDGSCSSEGS 384

Query: 426 RRFVVYSGSLDGSVKVWRI 444
              V  SG+LDG VK+W +
Sbjct: 385 SALVC-SGALDGDVKIWSV 402
>Os01g0946100 WD40-like domain containing protein
          Length = 431

 Score =  172 bits (436), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/360 (36%), Positives = 188/360 (52%), Gaps = 45/360 (12%)

Query: 101 ASLVKEDGHVYSLAAAGDVLYTGTDSENVRVWR--DRRELAGFRTGSGLVKAIVVADDGR 158
           A L    G V SL+  G+ L + +   ++  W+  D R  A F  G G VKA+  A  GR
Sbjct: 70  AVLRDHQGSVSSLSLCGEFLLSASTGADIVAWQQPDLRRFARFGHGEGSVKALAAAG-GR 128

Query: 159 IFTGHQDGKVRVWRADAGDPAVHRRVGSLPRLADYVRSSVNPSSYVETPXXXXXXXXEVW 218
           +F+ HQDG+VRVWR         + V +LP   DY+      +SYV+T          +W
Sbjct: 129 VFSAHQDGRVRVWRVSRRSENAFKLVAALPTTRDYLGKIFRHASYVQT----RRNHRRLW 184

Query: 219 LRHSDAVSCLSLDEGAGLLYSASWDGSFKVWRVSDSRCLESVCAHDDAINTVAAAGFDGV 278
           + H+D++SCL++ +G  ++YS SWD + KVWR+SD +CLES+ AHDDAIN VAA    G 
Sbjct: 185 IEHADSISCLAVHDG--VVYSGSWDKTLKVWRISDLKCLESIHAHDDAINAVAAD--SGT 240

Query: 279 VFTGSADGTVKVWRREEEPAASGGEAKTRHVLETVL-REDESAVTAIAVSAE--GRVVYV 335
           +++ SADG VK W          G+ K  H L+ +L   D  +  A+  SA+   R VY 
Sbjct: 241 IYSASADGHVKAW----------GKGKAAHFLQGILISRDGVSWNALVASADAGARRVYA 290

Query: 336 GSSDGDVTYWHWIDGE-ARYGGA--LRAHGTAVMCLXXXXXXXXXXXXDRTLCAWR---- 388
             SDG V  W  + G  +R+  +  ++AH  AV+CL            D+T+  WR    
Sbjct: 291 AGSDGHVVGWDRVGGRGSRWSLSCDVKAHDMAVLCLCVAGDLVFTGSADKTIGLWRWQTS 350

Query: 389 -----RGGGEHSRLAVLAGHTGPVKCVAVDEEETSSCS-SDGERRFVVYSGSLDGSVKVW 442
                      +R+ V+ GH GPVKC+     + S C  S+G    +VYSG LD S++VW
Sbjct: 351 GDGDGAAAAALARVGVIRGHEGPVKCI-----QASWCRVSNG---CMVYSGGLDKSIRVW 402
>Os06g0238700 WD40-like domain containing protein
          Length = 495

 Score =  169 bits (429), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 143/394 (36%), Positives = 180/394 (45%), Gaps = 63/394 (15%)

Query: 101 ASLVKEDGHVYSLAAAGDVLYTGTDSENVRVWRDRRELAGFR------------------ 142
           A+L     +V  LA  GD LY  +   ++R+W     +A  R                  
Sbjct: 28  ATLSGNSSYVSGLAVDGDSLYVASSDGHIRLWPLDMAMAMVREESTSSSSQGEVSRSTVA 87

Query: 143 -TGSGLVKAIVVADDGRIFTGHQDGKVRVWRADAGDPAVHRRVGSLPRLADYVRSSVNPS 201
            TGS  VK +    DG + + HQDG +RVWR   G   +  R   LP  AD +R+ + P 
Sbjct: 88  VTGSP-VKCLAATGDG-LVSSHQDGTIRVWRHAGGRRRLALR-AVLPTAADCLRALLLPG 144

Query: 202 S-YVETPXXXXXXXXEVWLRHSDAVSCLSLDEGAGLLYSASWDGSFKVWRVSDSRCLESV 260
             YVE            W+ H DAV+ L+L      +YS SWD S K WR+   RC ESV
Sbjct: 145 GGYVEV----RRHKRRAWVHHVDAVTALALSPDGESMYSVSWDRSLKAWRLPGLRCAESV 200

Query: 261 CA-HDDAINTVAAAGFDGVVFTGSADGTVKVWRREEEPAASGGEAKTRHVLETVLREDES 319
            A HDDAIN V AA  DG V+T SADGTVK WRR        G+ K    L  V+    +
Sbjct: 201 AAAHDDAINAVVAAP-DGHVYTASADGTVKAWRRRT------GQKKLS--LVCVMERHGA 251

Query: 320 AVTAIAVSAEGRVVYVGSSDGDVTYWH--------WIDGEARYGGALRAHGTAVMCLXXX 371
           AV A+A+   GRV+Y G+ D  V  W           D        LR H  AV+CL   
Sbjct: 252 AVNALALGGGGRVLYSGACDRSVVAWENSAGAGAGGADVRMVATATLRGHARAVLCLAAD 311

Query: 372 XXXXXXXXXDRTLCAWRRGG-GEHSRLAVLAGHTGPVK-------------CVAVDEEET 417
                    DRT+  WRRG    ++ LAVL GH G VK             C A   EE+
Sbjct: 312 GDVVCSGSADRTVRVWRRGATAAYTCLAVLDGHGGAVKSLALARGGAGCDRCCACHVEES 371

Query: 418 SSCSSDGERRFVVYSGSLDGSVKVWRISDIEPTN 451
           SSCS       +V SGSLD  VK+WR++  E   
Sbjct: 372 SSCSCAA----LVCSGSLDCDVKLWRVTVSEAIK 401
>Os01g0232200 
          Length = 571

 Score =  165 bits (417), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 174/369 (47%), Gaps = 58/369 (15%)

Query: 101 ASLVKEDGHVYSLAAAGDVLYTGTDSENVRVWR-----DRRELAGFRTGSGLVKAIVVAD 155
           ++L + DG V++LA A  VL+T +DS  VR W      +R  L     G G V AI  A 
Sbjct: 150 SALHRLDGDVHALAVARGVLFTASDSGRVRAWAAPGCFNRGYL---DVGRGRVPAIA-AC 205

Query: 156 DGRIFTGH-QDGKVRVWRADAGDPAVH---RRVGSLPRLADYVRSSVNPSSYVETPXXXX 211
            G + T H +D  VRVW   A     H   ++  +LP      +  +   +    P    
Sbjct: 206 GGTLVTSHSRDHHVRVWTVCASAVCDHIRAKKAATLP-----AKGGILSFTKRRPP---- 256

Query: 212 XXXXEVWLRHSDAVSCLSLDEGAGLLYSASWDGSFKVWRVSDSRCLESVCAHDDAINTVA 271
                    H D VSCL L   AGLLY+AS D + K W++SD  C +S  AHD AIN + 
Sbjct: 257 --------HHRDTVSCLVLHAVAGLLYTASHDHTVKAWKLSDGSCADSFVAHDGAINAML 308

Query: 272 AAGFDGVVFTGSADGTVKVWRREEEPAASGGEAKTRHVLETVLREDESAVTAIAVSAEGR 331
               DG +FTGSADGTVK+WRR       GG   T H L   LR + S V A+ +     
Sbjct: 309 INEADGCIFTGSADGTVKMWRR-----VYGG---TTHALIIALRSELSPVNALTLCHAAA 360

Query: 332 --------VVYVGSSDGDVTYW--HWIDGEARYGGALRAHGTAVMCLXXXX--XXXXXXX 379
                    +Y GSSDG V  W      G   + G L+ H  AV CL             
Sbjct: 361 ATGATRRCFLYAGSSDGYVNVWEKEASAGRPAHAGFLKGHRLAVFCLASGCGGRVVVSGS 420

Query: 380 XDRTLCAWRR----GGGEHSRLAVLAGHTGPVKCVAVDEEETSSCSSDGERRFVVYSGSL 435
            D T+  WRR    G   H+ LAV+ GH GPV+C+AV   E    + D E   VVYS  L
Sbjct: 421 EDATMRVWRRDGKGGSTSHTCLAVIEGHRGPVRCLAVGGGE----AGDVEGSMVVYSAGL 476

Query: 436 DGSVKVWRI 444
           D SVKVWRI
Sbjct: 477 DKSVKVWRI 485
>Os04g0481600 WD-40 repeat containing protein
          Length = 470

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/330 (34%), Positives = 167/330 (50%), Gaps = 29/330 (8%)

Query: 137 ELAGFRTGSGLVKAIVVADDGRI-FTGHQDGKVRVWRADAGDPAVHRRVGSLPRLADYVR 195
           ++A   + +G VK +     G+   TGHQDG++R+WR  +  P   R   +LP ++D +R
Sbjct: 142 DMADDTSAAGSVKCVAHLHGGKAAVTGHQDGRLRLWRMSSRAPDRLRLAAALPTVSDRLR 201

Query: 196 SSVNPSSYVETPXXXXXXXXEVWLRHSDAVSCLSLDEGAGLLYSASWDGSFKVWRVSDSR 255
               PS++V            +W+ H+DAVS ++      LL+S SWD + KVW V   R
Sbjct: 202 RFPVPSNHVTV----RRHHRRLWIEHADAVSGVAASADGRLLFSVSWDKTLKVWAVPSLR 257

Query: 256 CLESVCAHDDAINTVAAAGFDGVVFTGSADGTVKVWRREEEPAASGGEAKTR-------H 308
           CL+S+ AHDDA+N VA A  DG V+T SAD  V+VW     PAA    A  R       H
Sbjct: 258 CLQSLPAHDDAVNAVAVA-HDGTVYTASADRRVRVW-APRAPAAGPDRASRRPGKKPAYH 315

Query: 309 VLETVLREDESAVTAIAVSAEGRVVYVGSSDGDVTYWHWIDGEARY--GGALRAHGTAVM 366
           ++ T+ R   +AV A+AV   G+V+Y G +D  V  W   D  +     GALR H  AV+
Sbjct: 316 LVATLSRH-AAAVNAVAVGCGGQVLYSGGNDRCVVVWEREDSASHMVAVGALRGHRRAVL 374

Query: 367 CLXXXXXXXX------XXXXDRTLCAWRRG--GGEHSRLAVLAGHTGPVKCVA---VDEE 415
            +                  D+T+ AWRRG  G  +  +AV+ GH   V+ VA   V  +
Sbjct: 375 SVACAAGDAADGALVVSGAADQTVRAWRRGADGRGYYCVAVIDGHGSAVRSVAAALVTAQ 434

Query: 416 ETSSCSSD-GERRFVVYSGSLDGSVKVWRI 444
           +      D G+  + V S S DG V++W +
Sbjct: 435 KKRRADDDGGDEEWRVCSASFDGEVRLWSL 464
  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,472,972
Number of extensions: 711847
Number of successful extensions: 3044
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2862
Number of HSP's successfully gapped: 8
Length of query: 493
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 388
Effective length of database: 11,553,331
Effective search space: 4482692428
Effective search space used: 4482692428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)