FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0946100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.56 (0.0384) R2 : 0.522
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.37 (0.0973) R2dC : 0.21 R2C : 0.183
β3 : -1.46 (0.0975) R2dE : 0.236 R2E : 0.21
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.651 (0.0807) R2dN8 : 0.0883 R2N8 : 0.0851
σ : 0.719
deviance : 238.35
__
_____
C
peak time of C : 8.24
E
wheather : temperature
threshold : 29.31
memory length : 1350
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.32 0.719 3.63 -0.855 1.39 -1.88 0.851 4.22 0.769 8.2 29.8 1348 -- --
235.95 0.715 3.57 0.145 1.36 -1.44 0.793 -- 0.662 8.26 29.3 1336 -- --
236.52 0.716 3.63 -0.832 1.38 -1.88 -- 4.23 0.769 8.24 29.79 1347 -- --
237.98 0.718 3.56 0.122 1.38 -1.44 -- -- 0.666 8.26 29.35 1344 -- --
341.39 0.861 3.66 -0.809 -- -1.82 -- 4.1 0.796 -- 29.8 1405 -- --
340.94 0.866 3.53 0.579 1.37 -- 0.979 -- 0.787 7.67 -- -- -- --
343.62 0.868 3.53 0.604 1.37 -- -- -- 0.787 7.73 -- -- -- --
341.02 0.86 3.65 0.15 -- -1.47 -- -- 0.538 -- 28.9 1384 -- --
238.35 0.719 3.56 -- 1.37 -1.46 -- -- 0.651 8.24 29.31 1350 -- --
445.07 0.986 3.57 0.622 -- -- -- -- 0.806 -- -- -- -- --
353.24 0.879 3.55 -- 1.38 -- -- -- 0.719 7.7 -- -- -- --
340.84 0.86 3.62 -- -- -1.46 -- -- 0.559 -- 28.85 1384 -- --
455.26 0.996 3.58 -- -- -- -- -- 0.737 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 228.19 temperature 25 1440 > th dose dependent rect. 18 1
5 232.26 temperature 30 14400 < th dose independent rect. 15 13
8 232.28 temperature 30 14400 < th dose independent rect. 15 16
12 232.30 temperature 30 14400 < th dose independent rect. 15 4
16 232.32 temperature 30 14400 < th dose independent rect. 15 7
17 232.33 temperature 30 14400 > th dose independent rect. 15 3
67 232.86 temperature 30 14400 > th dose independent rect. 15 1
77 234.16 temperature 30 14400 < th dose independent sin 14 NA
84 234.42 temperature 30 14400 > th dose independent sin 14 NA
195 236.41 temperature 25 1440 > th dose dependent rect. 15 18
278 238.24 wind 5 43200 > th dose dependent rect. 3 13
280 238.28 temperature 25 14400 > th dose dependent rect. 17 3
282 238.31 temperature 30 1440 < th dose independent rect. 14 14
283 238.31 temperature 30 1440 < th dose independent rect. 14 17
292 238.38 temperature 30 1440 < th dose independent rect. 14 6
294 238.41 temperature 30 1440 < th dose independent rect. 14 10
297 238.43 temperature 30 1440 < th dose independent rect. 14 8
309 238.65 temperature 30 1440 < th dose independent rect. 14 20
317 238.73 temperature 25 1440 > th dose dependent sin 17 NA
331 238.85 temperature 25 4320 < th dose independent rect. 7 1
338 238.95 temperature 30 1440 < th dose independent rect. 14 22
354 239.14 wind 7 43200 < th dose independent rect. 3 13
374 239.23 wind 7 43200 > th dose independent rect. 2 14
392 239.40 temperature 25 1440 > th dose dependent rect. 6 15
395 239.41 temperature 25 1440 > th dose dependent rect. 3 18
427 239.55 temperature 25 14400 > th dose dependent rect. 16 8
432 239.58 temperature 25 14400 > th dose dependent rect. 17 6
437 239.61 temperature 30 1440 > th dose independent rect. 14 5
504 239.94 temperature 30 1440 < th dose independent sin 14 NA
547 240.11 temperature 25 14400 > th dose dependent rect. 16 14
563 240.16 temperature 30 1440 > th dose independent rect. 14 22
624 240.50 temperature 30 14400 > th dose independent rect. 12 1
650 240.58 wind 7 43200 < th dose independent sin 3 NA
679 240.69 temperature 25 1440 > th dose dependent no NA NA
686 240.73 temperature 30 1440 < th dose independent rect. 15 2
692 240.77 wind 7 43200 > th dose independent sin 3 NA
700 240.82 wind 5 43200 > th dose dependent sin 3 NA
708 240.86 temperature 30 14400 > th dose dependent rect. 14 2
746 241.08 wind 7 43200 > th dose dependent rect. 10 4
757 241.10 temperature 30 1440 < th dose independent rect. 18 22
771 241.15 wind 7 43200 > th dose independent rect. 20 20
822 241.33 temperature 30 14400 < th dose independent rect. 14 23
845 241.37 temperature 30 1440 < th dose independent rect. 9 22
849 241.38 temperature 30 1440 < th dose independent rect. 9 19
859 241.42 temperature 30 1440 < th dose independent rect. 9 11
864 241.44 temperature 30 1440 < th dose independent rect. 9 15
867 241.45 temperature 30 1440 < th dose independent rect. 9 13
870 241.46 wind 7 43200 < th dose independent rect. 20 20
875 241.48 temperature 25 4320 > th dose independent rect. 7 1
880 241.51 temperature 25 4320 > th dose dependent rect. 7 3
891 241.56 temperature 30 1440 < th dose independent rect. 11 23
920 241.65 temperature 30 14400 > th dose independent rect. 14 23
927 241.68 temperature 30 1440 < th dose independent rect. 23 21
928 241.68 temperature 30 1440 < th dose independent rect. 21 23
935 241.69 temperature 30 1440 < th dose independent rect. 1 19
949 241.71 temperature 30 1440 < th dose independent rect. 6 22
951 241.71 temperature 30 1440 < th dose independent rect. 1 23
952 241.72 temperature 30 1440 < th dose independent no NA NA
988 241.76 temperature 30 1440 < th dose independent rect. 6 13