BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0946100 Os01g0946100|AK072248
(431 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0946100 WD40-like domain containing protein 720 0.0
Os12g0594000 WD40-like domain containing protein 202 3e-52
Os03g0625300 WD40-like domain containing protein 182 4e-46
Os03g0738700 WD40-like domain containing protein 176 3e-44
Os02g0740900 WD-40 repeat containing protein 141 9e-34
Os06g0238700 WD40-like domain containing protein 140 2e-33
Os04g0481600 WD-40 repeat containing protein 126 3e-29
Os01g0232200 119 4e-27
>Os01g0946100 WD40-like domain containing protein
Length = 431
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/431 (84%), Positives = 366/431 (84%)
Query: 1 MAMPLRDPTDRAAMSAPLLPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALP 60
MAMPLRDPTDRAAMSAPLLPR EALP
Sbjct: 1 MAMPLRDPTDRAAMSAPLLPRSAFVSSASFSSFSSVASFSSTSSSFSDPAVPSDVVEALP 60
Query: 61 MSRDSFKALAVLRDHQGSVSSLSLCGEFLLSASTGADIVAWQQPDLRRFARFGHGEGSVK 120
MSRDSFKALAVLRDHQGSVSSLSLCGEFLLSASTGADIVAWQQPDLRRFARFGHGEGSVK
Sbjct: 61 MSRDSFKALAVLRDHQGSVSSLSLCGEFLLSASTGADIVAWQQPDLRRFARFGHGEGSVK 120
Query: 121 ALAAAGGRVFSAHQDGXXXXXXXXXXXENAFKLVAALPTTRDYLGKIFRHASYVQTRRNH 180
ALAAAGGRVFSAHQDG ENAFKLVAALPTTRDYLGKIFRHASYVQTRRNH
Sbjct: 121 ALAAAGGRVFSAHQDGRVRVWRVSRRSENAFKLVAALPTTRDYLGKIFRHASYVQTRRNH 180
Query: 181 RRLWIEHADSISCLAVHDGVVYSGSWDKTLKVWRISDLKCLESIHAHDDAINAVAADSGT 240
RRLWIEHADSISCLAVHDGVVYSGSWDKTLKVWRISDLKCLESIHAHDDAINAVAADSGT
Sbjct: 181 RRLWIEHADSISCLAVHDGVVYSGSWDKTLKVWRISDLKCLESIHAHDDAINAVAADSGT 240
Query: 241 IYSASADGHVKAWGKGKAAHFLQGILISRDGVSWNALVASADAGARRVYAAGSDGHVVGW 300
IYSASADGHVKAWGKGKAAHFLQGILISRDGVSWNALVASADAGARRVYAAGSDGHVVGW
Sbjct: 241 IYSASADGHVKAWGKGKAAHFLQGILISRDGVSWNALVASADAGARRVYAAGSDGHVVGW 300
Query: 301 DRVGGRGSRWSLSCDVKAHDMAVLCLCVAGDLVFTGSADKTIGLWRWQTSXXXXXXXXXX 360
DRVGGRGSRWSLSCDVKAHDMAVLCLCVAGDLVFTGSADKTIGLWRWQTS
Sbjct: 301 DRVGGRGSRWSLSCDVKAHDMAVLCLCVAGDLVFTGSADKTIGLWRWQTSGDGDGAAAAA 360
Query: 361 XXXXXXXXXHEGPVKCIQASWCRVSNGCMVYSGGLDKSIRVWWVPNGWKANEQKQQQEND 420
HEGPVKCIQASWCRVSNGCMVYSGGLDKSIRVWWVPNGWKANEQKQQQEND
Sbjct: 361 LARVGVIRGHEGPVKCIQASWCRVSNGCMVYSGGLDKSIRVWWVPNGWKANEQKQQQEND 420
Query: 421 TKDHKNCVFLR 431
TKDHKNCVFLR
Sbjct: 421 TKDHKNCVFLR 431
>Os12g0594000 WD40-like domain containing protein
Length = 465
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 184/346 (53%), Gaps = 29/346 (8%)
Query: 75 HQGSVSSLSLCGEFLLSASTGADIVAWQQPDLRRFARFGHGEGSVKALAAAG-GRVFSAH 133
G V SL+ GE L + + ++ W+ R FA F G G VKA+ AG GR+++ H
Sbjct: 92 EDGHVYSLAAAGELLYTGTDSKNVRVWRH--RREFAGFRSGSGLVKAIVVAGDGRIYTGH 149
Query: 134 QDGXXXXXXXXXXXENAFKLVAALPTTRDYLGKIFRHASYVQTRRNHRRLWIEHADSISC 193
QDG + V +LP D L R + YV+TRR H LW+ H D++SC
Sbjct: 150 QDGKVRVWRASADDPAVHRRVGSLPGLGDVLRSAVRPSRYVETRRRHSALWLRHFDAVSC 209
Query: 194 LAVHD--GVVYSGSWDKTLKVWRISDLKCLESIHAHDDAINAVAADS--GTIYSASADGH 249
L++ G++YSGSWDKT KVWR+SD +CLES+ AHDDA+N VAA +++ SADG
Sbjct: 210 LSLDAAAGLLYSGSWDKTFKVWRVSDSRCLESVRAHDDAVNTVAAAGFDALVFTGSADGA 269
Query: 250 VKAW----GKGKAA-HFLQGILISRDGVSWNALVASADAGARRVYAAGSDGHVVGWD-RV 303
VK W GKG A H ++ +L R G S +A A A AR VY SDG V W R
Sbjct: 270 VKVWRREPGKGGATRHAMERVL--RKGESAVTAIAVA-AEARVVYVGSSDGAVTHWQWRR 326
Query: 304 GGRGSRWSLSCD--VKAHDMAVLCLCVAGDLVFTGSADKTIGLWRWQTSXXXXXXXXXXX 361
GG G ++ H MAVLCL VAG +V +GSAD+TI +WR +
Sbjct: 327 GGAGVAGPPRNGGALRGHRMAVLCLAVAGRVVVSGSADRTISVWRREEG--------ADH 378
Query: 362 XXXXXXXXHEGPVKCIQASWCRVSNG---CMVYSGGLDKSIRVWWV 404
H GPVKC+ + G +VYSG LD S++VW V
Sbjct: 379 ARLAVLAGHTGPVKCVAMDEEDDTAGDKRWVVYSGSLDGSVKVWRV 424
>Os03g0625300 WD40-like domain containing protein
Length = 493
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 132/361 (36%), Positives = 189/361 (52%), Gaps = 45/361 (12%)
Query: 69 LAVLRDHQGSVSSLSLCGEFLLSASTGADIVAWQQPDLRRFARFGHGEGSVKALAAAG-G 127
+A L G V SL+ G+ L + + ++ W+ D R A F G G VKA+ A G
Sbjct: 100 VASLVKEDGHVYSLAAAGDVLYTGTDSENVRVWR--DRRELAGFRTGSGLVKAIVVADDG 157
Query: 128 RVFSAHQDGXXXXXXXXXXXENAFKLVAALPTTRDYLGKIFRHASYVQT----RRNHRRL 183
R+F+ HQDG + V +LP DY+ +SYV+T R R +
Sbjct: 158 RIFTGHQDGKVRVWRADAGDPAVHRRVGSLPRLADYVRSSVNPSSYVETPRRRRGRRREV 217
Query: 184 WIEHADSISCLAVHDG--VVYSGSWDKTLKVWRISDLKCLESIHAHDDAINAVAAD--SG 239
W+ H+D++SCL++ +G ++YS SWD + KVWR+SD +CLES+ AHDDAIN VAA G
Sbjct: 218 WLRHSDAVSCLSLDEGAGLLYSASWDGSFKVWRVSDSRCLESVCAHDDAINTVAAAGFDG 277
Query: 240 TIYSASADGHVKAW----------GKGKAAHFLQGILISRDGVSWNALVASADAGARRVY 289
+++ SADG VK W G+ K H L+ +L D + A+ SA+ R VY
Sbjct: 278 VVFTGSADGTVKVWRREEEPAASGGEAKTRHVLETVL-REDESAVTAIAVSAE--GRVVY 334
Query: 290 AAGSDGHVVGWDRVGGRGSRWSLSCDVKAHDMAVLCLCVAGDLVFTGSADKTIGLWRWQT 349
SDG V W + G +R+ + ++AH AV+CL VAG++V +GSAD+T+ WR
Sbjct: 335 VGSSDGDVTYWHWIDGE-ARYGGA--LRAHGTAVMCLAVAGNVVVSGSADRTLCAWR--- 388
Query: 350 SXXXXXXXXXXXXXXXXXXXHEGPVKCI-----QASWCRVSNG---CMVYSGGLDKSIRV 401
H GPVKC+ + S C S+G +VYSG LD S++V
Sbjct: 389 ------RGGGEHSRLAVLAGHTGPVKCVAVDEEETSSCS-SDGERRFVVYSGSLDGSVKV 441
Query: 402 W 402
W
Sbjct: 442 W 442
>Os03g0738700 WD40-like domain containing protein
Length = 489
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 176/364 (48%), Gaps = 49/364 (13%)
Query: 69 LAVLRDHQGSVSSLSLCGEFLLSASTGADIVAWQQPDLRRFARFGHGEGSVKALAAAGGR 128
+ L +G + SL+ + L + S +I W++ + F G VKA+ +G R
Sbjct: 110 IGSLVREEGHIYSLAAKTDTLYTGSDSKNIRVWRK--QKDSGGFKSSSGLVKAIVISGER 167
Query: 129 VFSAHQDGXXXXXXXXXXXENAFKLVAALPTTRDYLGKIFRHASYVQTRRNHRRLWIEHA 188
+F+ HQDG K V +LP RD+L ++YV+ R+N LWI H+
Sbjct: 168 IFTGHQDGKIRVWKVSPK-NGLHKRVGSLPRLRDFLRGSLNPSNYVEVRKNRTALWIRHS 226
Query: 189 DSISCLAVHD---GVVYSGSWDKTLKVWRISDLKCLESIHAHDDAINA-VAADSGTIYSA 244
D++SCL+ D G++YSGSWD+T KVWRI+D KCLES+ AHDD +NA VAA G +++
Sbjct: 227 DAVSCLSPTDSAQGLLYSGSWDRTFKVWRINDSKCLESVVAHDDNVNAIVAAFDGLVFTG 286
Query: 245 SADGHVKAW-----GKGKAAHFLQGILISRDGVSWNALVASADAGARRVYAAGSDGHVVG 299
SADG VK W GKG +Q +L V NAL SA A +Y SDG V
Sbjct: 287 SADGTVKVWKRELQGKGTKHVAVQTLLKQEHAV--NALAVSAVAPV--LYCGSSDGLVNF 342
Query: 300 WDRVGGRGSRWSLSCDV-KAHDMAVLCLCVAGDLVFTGSADKTIGLWRWQTSXXXXXXXX 358
W+ G R + V + H AV CL AG L+ +GSAD TI +WR
Sbjct: 343 WE-----GERHLVHGGVLRGHKKAVFCLAAAGSLLLSGSADNTIYVWR---------RDG 388
Query: 359 XXXXXXXXXXXHEGPVKCIQASWCRVSNGC------------------MVYSGGLDKSIR 400
H P++C+ N +VYSG LDKSI+
Sbjct: 389 GVHSCLSVLTGHTEPIRCLAIVEDNKDNAAVPVDAVDSSFASGSSTRWIVYSGSLDKSIK 448
Query: 401 VWWV 404
VW V
Sbjct: 449 VWRV 452
>Os02g0740900 WD-40 repeat containing protein
Length = 407
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 160/310 (51%), Gaps = 35/310 (11%)
Query: 69 LAVLRDHQGS---VSSLSLCGEFLLSASTGADIVAWQQPDLRR----------------F 109
+A ++ H + VS+L++ G+ L AS+ I W RR
Sbjct: 35 IATIKGHSSASAYVSALAVDGDSLYIASSDGSIRLWALDGARRSQEEQQQDDGCSSSSSS 94
Query: 110 ARFGHGEGSVKALAAAG--GRVFSAHQDGXXXX---XXXXXXXENAFKLV--AALPTTRD 162
+ SVK+L A G G + S+HQDG E +LV A LPT D
Sbjct: 95 TTVADTDSSVKSLLATGNGGLLLSSHQDGKIRAWRAGSRRRDGETRPQLVLRAVLPTAVD 154
Query: 163 YLGKIFRHASYVQTRRNHRRLWIEHADSISCLAVH-DG-VVYSGSWDKTLKVWRISDLKC 220
L SYV+ RR+ R W+ H D+++ LAV DG ++YS SWD+++KVW + +C
Sbjct: 155 RLRTCLLPWSYVEIRRHRRCTWVHHVDAVTALAVSPDGALLYSASWDRSIKVWSLPGFRC 214
Query: 221 LESIHA-HDDAINAVA-ADSGTIYSASADGHVKAW--GKGKAAHFLQGILISRDGVSWNA 276
+ESI A HDDAINA+A + G +Y+ SAD +KAW G G+ H L G + R + NA
Sbjct: 215 VESIAAAHDDAINALAVSPDGRVYTGSADKKIKAWTRGPGQRKHALVGTM-ERHRSAVNA 273
Query: 277 LVASADAGARRVYAAGSDGHVVGWDRVGGRGSRWSLSCDVKAHDMAVLCLCVAGDLVFTG 336
L A+ + +Y+ D VV W+ GG + ++ H A+LCL AG+LV +G
Sbjct: 274 LALGANG--KVLYSGACDRSVVVWESAGGGDGGMEATGTLRGHARAILCLAAAGELVCSG 331
Query: 337 SADKTIGLWR 346
SAD+T+ +WR
Sbjct: 332 SADRTVRVWR 341
>Os06g0238700 WD40-like domain containing protein
Length = 495
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 177/374 (47%), Gaps = 38/374 (10%)
Query: 66 FKALAVLRDHQGSVSSLSLCGEFLLSASTGADIVAWQQPDLRRFAR------FGHGEGS- 118
++ +A L + VS L++ G+ L AS+ I W R GE S
Sbjct: 24 YQCIATLSGNSSYVSGLAVDGDSLYVASSDGHIRLWPLDMAMAMVREESTSSSSQGEVSR 83
Query: 119 ---------VKALAAAGGRVFSAHQDGXXXXXXXXXXXENAFKLVAALPTTRDYL-GKIF 168
VK LAA G + S+HQDG L A LPT D L +
Sbjct: 84 STVAVTGSPVKCLAATGDGLVSSHQDGTIRVWRHAGGRRR-LALRAVLPTAADCLRALLL 142
Query: 169 RHASYVQTRRNHRRLWIEHADSISCLAVH-DG-VVYSGSWDKTLKVWRISDLKCLESIHA 226
YV+ RR+ RR W+ H D+++ LA+ DG +YS SWD++LK WR+ L+C ES+ A
Sbjct: 143 PGGGYVEVRRHKRRAWVHHVDAVTALALSPDGESMYSVSWDRSLKAWRLPGLRCAESVAA 202
Query: 227 -HDDAINAV-AADSGTIYSASADGHVKAWGKGKAAHFLQGI-LISRDGVSWNALVASADA 283
HDDAINAV AA G +Y+ASADG VKAW + L + ++ R G + NAL +
Sbjct: 203 AHDDAINAVVAAPDGHVYTASADGTVKAWRRRTGQKKLSLVCVMERHGAAVNAL--ALGG 260
Query: 284 GARRVYAAGSDGHVVGWDRVGGRGS-----RWSLSCDVKAHDMAVLCLCVAGDLVFTGSA 338
G R +Y+ D VV W+ G G+ R + ++ H AVLCL GD+V +GSA
Sbjct: 261 GGRVLYSGACDRSVVAWENSAGAGAGGADVRMVATATLRGHARAVLCLAADGDVVCSGSA 320
Query: 339 DKTIGLWRWQTSXXXXXXXXX--XXXXXXXXXXHEGPVKCIQASWCRV--SNGC----MV 390
D+T+ +WR + G C + C V S+ C +V
Sbjct: 321 DRTVRVWRRGATAAYTCLAVLDGHGGAVKSLALARGGAGCDRCCACHVEESSSCSCAALV 380
Query: 391 YSGGLDKSIRVWWV 404
SG LD +++W V
Sbjct: 381 CSGSLDCDVKLWRV 394
>Os04g0481600 WD-40 repeat containing protein
Length = 470
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 135/257 (52%), Gaps = 32/257 (12%)
Query: 117 GSVKALAA--AGGRVFSAHQDGXXXXXXXXXXXENAFKLVAALPTTRDYLGKIFRHASYV 174
GSVK +A G + HQDG + +L AALPT D L + +++V
Sbjct: 151 GSVKCVAHLHGGKAAVTGHQDGRLRLWRMSSRAPDRLRLAAALPTVSDRLRRFPVPSNHV 210
Query: 175 QTRRNHRRLWIEHADSISCLAVH-DG-VVYSGSWDKTLKVWRISDLKCLESIHAHDDAIN 232
RR+HRRLWIEHAD++S +A DG +++S SWDKTLKVW + L+CL+S+ AHDDA+N
Sbjct: 211 TVRRHHRRLWIEHADAVSGVAASADGRLLFSVSWDKTLKVWAVPSLRCLQSLPAHDDAVN 270
Query: 233 AVA-ADSGTIYSASADGHVKAW----------------GKGKAAHFLQGILISRDGVSWN 275
AVA A GT+Y+ASAD V+ W GK A H + +SR
Sbjct: 271 AVAVAHDGTVYTASADRRVRVWAPRAPAAGPDRASRRPGKKPAYHLVA--TLSRHAA--A 326
Query: 276 ALVASADAGARRVYAAGSDGHVVGWDRVGGRGSRWSLSCDVKAHDMAVLCL------CVA 329
+ G + +Y+ G+D VV W+R ++ ++ H AVL +
Sbjct: 327 VNAVAVGCGGQVLYSGGNDRCVVVWEREDSASHMVAVGA-LRGHRRAVLSVACAAGDAAD 385
Query: 330 GDLVFTGSADKTIGLWR 346
G LV +G+AD+T+ WR
Sbjct: 386 GALVVSGAADQTVRAWR 402
>Os01g0232200
Length = 571
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 160/363 (44%), Gaps = 35/363 (9%)
Query: 60 PMSRDSFKALAVLRDHQGSVSSLSLCGEFLLSASTGADIVAWQQPDLRRFARFGHGEGSV 119
P + L+ L G V +L++ L +AS + AW P G G V
Sbjct: 140 PSPAAIYHCLSALHRLDGDVHALAVARGVLFTASDSGRVRAWAAPGCFNRGYLDVGRGRV 199
Query: 120 KALAAAGGRVFSAHQDGXXXXXXXXXXXENAFKLVAALPTTRDYLGKIFRHASYVQTRRN 179
A+AA GG + ++H + A T G I S+ + R
Sbjct: 200 PAIAACGGTLVTSHSRDHHVRVWTVCASAVCDHIRAKKAATLPAKGGIL---SFTKRRPP 256
Query: 180 HRRLWIEHADSISCLAVHD--GVVYSGSWDKTLKVWRISDLKCLESIHAHDDAINAVAAD 237
H H D++SCL +H G++Y+ S D T+K W++SD C +S AHD AINA+ +
Sbjct: 257 H------HRDTVSCLVLHAVAGLLYTASHDHTVKAWKLSDGSCADSFVAHDGAINAMLIN 310
Query: 238 S--GTIYSASADGHVKAWGK--GKAAHFLQGILISRDGVS-WNALVASADAGARR----- 287
G I++ SADG VK W + G H L I+ R +S NAL A A
Sbjct: 311 EADGCIFTGSADGTVKMWRRVYGGTTHAL--IIALRSELSPVNALTLCHAAAATGATRRC 368
Query: 288 -VYAAGSDGHVVGWDRVGGRGSRWSLSCDVKAHDMAVLCLC--VAGDLVFTGSADKTIGL 344
+YA SDG+V W++ G R + + +K H +AV CL G +V +GS D T+ +
Sbjct: 369 FLYAGSSDGYVNVWEKEASAG-RPAHAGFLKGHRLAVFCLASGCGGRVVVSGSEDATMRV 427
Query: 345 WRWQTSXXXXXXXXXXXXXXXXXXXHEGPVKCIQASWCR---VSNGCMVYSGGLDKSIRV 401
WR H GPV+C+ V +VYS GLDKS++V
Sbjct: 428 WRRD-----GKGGSTSHTCLAVIEGHRGPVRCLAVGGGEAGDVEGSMVVYSAGLDKSVKV 482
Query: 402 WWV 404
W +
Sbjct: 483 WRI 485
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,088,537
Number of extensions: 564421
Number of successful extensions: 2136
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2007
Number of HSP's successfully gapped: 8
Length of query: 431
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 327
Effective length of database: 11,605,545
Effective search space: 3795013215
Effective search space used: 3795013215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)