BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0731600 Os02g0731600|AK058271
(108 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0731600 Conserved hypothetical protein 185 7e-48
Os06g0264800 Conserved hypothetical protein 156 3e-39
Os08g0430600 Conserved hypothetical protein 136 3e-33
Os06g0217700 Conserved hypothetical protein 90 4e-19
Os09g0465800 Conserved hypothetical protein 89 5e-19
Os10g0536500 Conserved hypothetical protein 75 8e-15
Os07g0469100 Similar to Thylakoid membrane phosphoprotein 1... 72 7e-14
Os02g0759900 Conserved hypothetical protein 69 9e-13
>Os02g0731600 Conserved hypothetical protein
Length = 108
Score = 185 bits (469), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 17 GDELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYT 76
GDELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYT
Sbjct: 17 GDELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYT 76
Query: 77 GWFVYRYLLFKESRKELADDVDSLKKRIAGTE 108
GWFVYRYLLFKESRKELADDVDSLKKRIAGTE
Sbjct: 77 GWFVYRYLLFKESRKELADDVDSLKKRIAGTE 108
>Os06g0264800 Conserved hypothetical protein
Length = 156
Score = 156 bits (394), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 70/92 (76%), Positives = 86/92 (93%)
Query: 17 GDELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYT 76
GDEL+ DLKAKW+A+E+K T L Y+GGA++ALWL++V+VGA+NSVPLLPK +ELVGLGYT
Sbjct: 65 GDELVADLKAKWEAIEDKPTFLLYSGGAVVALWLTTVVVGAINSVPLLPKILELVGLGYT 124
Query: 77 GWFVYRYLLFKESRKELADDVDSLKKRIAGTE 108
GWFVYRYLLFKESRKELA D+++LKK+IAGTE
Sbjct: 125 GWFVYRYLLFKESRKELATDIETLKKKIAGTE 156
>Os08g0430600 Conserved hypothetical protein
Length = 159
Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 78/89 (87%)
Query: 20 LIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTGWF 79
++ +LK KWDA+ENKS+VL Y GGAIIA+WLSS++V AV+SVP+LP +ELVGLGY+GWF
Sbjct: 70 ILSELKEKWDAIENKSSVLFYGGGAIIAVWLSSIVVKAVDSVPVLPNILELVGLGYSGWF 129
Query: 80 VYRYLLFKESRKELADDVDSLKKRIAGTE 108
VYRYLLFKE+R+ELA+ D+LKKRI G E
Sbjct: 130 VYRYLLFKENREELANGFDALKKRITGNE 158
>Os06g0217700 Conserved hypothetical protein
Length = 223
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 18 DELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTG 77
D L + L +K D E ST + Y GA IA W+ S +V A++S+PL PK +++VGLGYT
Sbjct: 132 DALSQALSSKLDFKET-STFVMYGSGAFIAGWILSAVVSAIDSIPLFPKILQIVGLGYTI 190
Query: 78 WFVYRYLLFKESRKELADDVDSLKKRIAG 106
WF RYLLFKE+R EL VD LK++I G
Sbjct: 191 WFSTRYLLFKENRDELFVKVDDLKRKITG 219
>Os09g0465800 Conserved hypothetical protein
Length = 181
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 32 ENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTGWFVYRYLLFKESRK 91
EN T L Y A++ +W+SS++V A++SVPL+P+ ME+VGLG+T WF RYL+FKE+R
Sbjct: 103 ENSYTALVYGTSALVTIWISSIVVSALDSVPLVPQVMEVVGLGFTVWFTSRYLIFKENRD 162
Query: 92 ELADDVDSLKKRIAGTE 108
EL + S+KK+I G+
Sbjct: 163 ELITRIGSIKKQILGSR 179
>Os10g0536500 Conserved hypothetical protein
Length = 172
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 19 ELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTGW 78
E I LK +WD +E+K V T A A + +W + +V A++ +P++P ME VG+GY+GW
Sbjct: 84 EFINALKQEWDRIEDKYAVTTLAVAASLGMWSAGGVVSAIDRLPIVPGLMEAVGIGYSGW 143
Query: 79 FVYRYLLFKESRK 91
F YR LLFK R+
Sbjct: 144 FAYRNLLFKPDRE 156
>Os07g0469100 Similar to Thylakoid membrane phosphoprotein 14 kDa, chloroplast
precursor
Length = 150
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%)
Query: 19 ELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTGW 78
E+++ + W VE+K V A++ LW + + A++ +PLLP +ELVG+GYTGW
Sbjct: 60 EVVKAAQDAWAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDRLPLLPGVLELVGIGYTGW 119
Query: 79 FVYRYLLFKESRKELADDVDSLKKRIAGTE 108
F YR L+F+ R+ L + S I G+
Sbjct: 120 FTYRNLIFQPDREALVSKIKSTYNEITGSS 149
>Os02g0759900 Conserved hypothetical protein
Length = 205
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 21 IEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTGWFV 80
++D+ +K D ++ T++ Y GA++ LW+ S +V A++S+PL+PK +EL+G GY+ WF
Sbjct: 122 LDDILSKLD-IQVTPTLVLYGSGALVVLWVLSSVVSAIDSIPLVPKVLELIGTGYSIWFT 180
Query: 81 YRYLLFKESRKELADDVDSLKKRI 104
RYLLFKESR +L + LK+RI
Sbjct: 181 SRYLLFKESRDKLFAKFEDLKERI 204
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,073,440
Number of extensions: 100799
Number of successful extensions: 258
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 8
Length of query: 108
Length of database: 17,035,801
Length adjustment: 76
Effective length of query: 32
Effective length of database: 13,067,537
Effective search space: 418161184
Effective search space used: 418161184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)