BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0445600 Os02g0445600|AK063150
(97 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0445600 Similar to Auxin-induced SAUR-like protein (Fr... 163 2e-41
Os02g0445100 Similar to Auxin-induced SAUR-like protein 105 9e-24
Os08g0118800 73 5e-14
Os02g0143400 Auxin responsive SAUR protein family protein 72 1e-13
Os06g0701900 Auxin responsive SAUR protein family protein 69 9e-13
Os08g0118500 Similar to Auxin-induced SAUR-like protein 68 1e-12
Os02g0143300 Similar to SAUR protein (Fragment) 67 3e-12
Os04g0537100 Similar to Auxin-induced protein X15 64 3e-11
Os06g0137400 63 4e-11
Os09g0437400 Auxin responsive SAUR protein family protein 63 4e-11
>Os02g0445600 Similar to Auxin-induced SAUR-like protein (Fragment)
Length = 97
Score = 163 bits (413), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 85/97 (87%)
Query: 1 LKQMLRRCSSSLGIKXXXXXXXXXXXXVPRGHFAVYVGISRRRYIVPVACLAAPEFQELL 60
LKQMLRRCSSSLGIK VPRGHFAVYVGISRRRYIVPVACLAAPEFQELL
Sbjct: 1 LKQMLRRCSSSLGIKGAGGDDDGLPGDVPRGHFAVYVGISRRRYIVPVACLAAPEFQELL 60
Query: 61 RKAEEEFGFDHDMGITLPCDEATFHGVLASASATSIR 97
RKAEEEFGFDHDMGITLPCDEATFHGVLASASATSIR
Sbjct: 61 RKAEEEFGFDHDMGITLPCDEATFHGVLASASATSIR 97
>Os02g0445100 Similar to Auxin-induced SAUR-like protein
Length = 96
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 65/93 (69%), Gaps = 7/93 (7%)
Query: 1 LKQMLRRCSSSLGIKXXXXXXXXXXXXVPRGHFAVYVGISRRRYIVPVACLAAPEFQELL 60
LKQ+LRRCSS LG + VPRGHF VYVG SR RY+VP+ACL P+F LL
Sbjct: 11 LKQILRRCSS-LGRRQQQQGA------VPRGHFPVYVGESRCRYVVPIACLEHPDFLLLL 63
Query: 61 RKAEEEFGFDHDMGITLPCDEATFHGVLASASA 93
RKAEEEFGF+HD ITLPC EA F +LA+ +A
Sbjct: 64 RKAEEEFGFEHDAAITLPCHEADFEALLAALTA 96
>Os08g0118800
Length = 102
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 28 VPRGHFAVYVGISRRRYIVPVACLAAPEFQELLRKAEEEFGFDH--DMGITLPCDEATFH 85
VPRGHFAVYVG +R R++VP A L P F LL+ EEE+GFDH G+T+PC E F
Sbjct: 27 VPRGHFAVYVGEARARFVVPTAYLRQPAFVALLKSVEEEYGFDHCGGGGLTIPCSERDFS 86
Query: 86 GVLASASAT 94
+L +++
Sbjct: 87 ALLGRLASS 95
>Os02g0143400 Auxin responsive SAUR protein family protein
Length = 130
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 48/88 (54%)
Query: 1 LKQMLRRCSSSLGIKXXXXXXXXXXXXVPRGHFAVYVGISRRRYIVPVACLAAPEFQELL 60
L Q+L+R + VP+G FAV VG RR+++P L F++LL
Sbjct: 19 LHQLLKRWKRAALAPKAGKNNNGGGASVPKGFFAVCVGEEMRRFVIPTEYLGHWAFEQLL 78
Query: 61 RKAEEEFGFDHDMGITLPCDEATFHGVL 88
RKAEEEFGF H+ + +PCD F G+L
Sbjct: 79 RKAEEEFGFQHEGALRIPCDVEVFEGIL 106
>Os06g0701900 Auxin responsive SAUR protein family protein
Length = 134
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 1 LKQMLRRCSSSLGIKXXXXXXXXXXXXVPRGHFAVYVGISRRRYIVPVACLAAPEFQELL 60
L+Q+L+R K VP+G FAVYVG RR+++P L F+ LL
Sbjct: 22 LQQLLKR------WKKLATMAPGGRSGVPKGSFAVYVGEEMRRFVIPTEYLGHWAFERLL 75
Query: 61 RKAEEEFGFDHDMGITLPCDEATFHGVLASASATS 95
R AEEEFGF H + +PCD A F L +A +
Sbjct: 76 RDAEEEFGFRHQGALRIPCDVAAFEATLRLVAAGN 110
>Os08g0118500 Similar to Auxin-induced SAUR-like protein
Length = 109
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 28 VPRGHFAVYVGISRRRYIVPVACLAAPEFQELLRKAEEEFGFDHDM--GITLPC-DEATF 84
VPRGHFAVYVG R+R+++P A L P F LL++ EEEFGFD G+T+PC E F
Sbjct: 34 VPRGHFAVYVGERRKRFVIPTAYLKHPSFVLLLKRVEEEFGFDCHRCGGLTIPCATEGDF 93
Query: 85 HGVLASASATS 95
+A A A+
Sbjct: 94 ASFVAEAIASD 104
>Os02g0143300 Similar to SAUR protein (Fragment)
Length = 120
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 28 VPRGHFAVYVGISRRRYIVPVACLAAPEFQELLRKAEEEFGFDHDMGITLPCDEATFHGV 87
VP+G+FAVYVG RR++VP + L P F+ L+ A +EFGF + G+ LPC E F
Sbjct: 35 VPKGYFAVYVGAEARRFVVPTSYLRQPAFRGLMELAADEFGFAQEGGLRLPCREEDFQAT 94
Query: 88 LASASA 93
+A+ A
Sbjct: 95 VAALDA 100
>Os04g0537100 Similar to Auxin-induced protein X15
Length = 167
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 28 VPRGHFAVYVGISRR----RYIVPVACLAAPEFQELLRKAEEEFGFDHDMGITLPCDEAT 83
P+G AVYVG RY+VPV P F ELLR+AEEEFGF H GIT+PC +
Sbjct: 90 TPKGQVAVYVGGGNPGESLRYVVPVVYFNHPMFGELLREAEEEFGFQHPGGITIPCAASR 149
Query: 84 FH 85
F
Sbjct: 150 FE 151
>Os06g0137400
Length = 119
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 59/103 (57%), Gaps = 14/103 (13%)
Query: 1 LKQMLRRCSSSLGIKXXXXXXXXXX----------XXVPRGHFAVYVGISRRRYIVPVAC 50
LKQ+L+RCSS LG + VPRGHFAVYVG RRR++VP+A
Sbjct: 11 LKQILKRCSS-LGRRQQEQKQVSEWEEEEEASGLPSDVPRGHFAVYVGERRRRFVVPLAL 69
Query: 51 LAAPEFQELLRKAEEEFGFDHDMG---ITLPCDEATFHGVLAS 90
L PEF+ LLR+AEEEFGF + LPC+E F + +S
Sbjct: 70 LDRPEFRSLLRRAEEEFGFAGAGAGGLLVLPCEEVAFRSLTSS 112
>Os09g0437400 Auxin responsive SAUR protein family protein
Length = 190
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 28 VPRGHFAVYVGISRRRYIVPVACLAAPEFQELLRKAEEEFGFDHDMGITLPCDEATFHGV 87
VPRG+ VYVG +RR+++P L P F+ LL KAEEEFGF H + +PC+ F +
Sbjct: 100 VPRGYCPVYVGPEQRRFVIPTRYLGHPVFRLLLEKAEEEFGFCHQGALAIPCETEAFKYI 159
Query: 88 L 88
L
Sbjct: 160 L 160
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,877,630
Number of extensions: 98180
Number of successful extensions: 237
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 12
Length of query: 97
Length of database: 17,035,801
Length adjustment: 66
Effective length of query: 31
Effective length of database: 13,589,677
Effective search space: 421279987
Effective search space used: 421279987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)