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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0143400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Auxin responsive SAUR protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0138) R2 : 0.497
β1 : -0.0757 (0.0503) R2dD : 0.00262 R2D : -0.0215
β2 : -- (--) R2dC : -- R2C : --
β3 : 18 (0.852) R2dE : 5.7 R2E : -4.88
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -44.6 (2.18) R2dD*E : 5.36 R2D*E : -5.2
γ1 : -0.039 (0.0292) R2dN8 : 0.00264 R2N8 : -0.00628
σ : 0.256
deviance : 30.14
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 9.759
memory length : 11
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 1.58

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.18 0.258 2.93 -0.0638 0.0293 16.5 0.362 -40.9 -0.0379 16.9 9.848 10 12 1.03
57.07 0.355 2.9 0.0106 0.0878 1.34 -0.0567 -- -0.0523 12.1 9.848 10 12 1.03
29.92 0.255 2.93 -0.0659 0.0601 17.7 -- -44.1 -0.0379 12.2 9.76 11 12 1.59
52.86 0.339 2.89 0.0588 0.047 1.41 -- -- -0.0303 12.9 17.55 36 11.9 1.18
30.14 0.256 2.93 -0.0757 -- 18 -- -44.6 -0.039 -- 9.759 11 12 1.58
58.95 0.36 2.9 0.0254 0.102 -- 0.0341 -- -0.0551 12.8 -- -- -- --
58.95 0.36 2.9 0.0265 0.102 -- -- -- -0.055 12.6 -- -- -- --
52.06 0.336 2.9 0.0456 -- 1.7 -- -- -0.0313 -- 16.96 29 11.6 1.45
51.85 0.335 2.9 -- 0.0483 1.55 -- -- -0.0394 12.7 17.45 40 12 1.18
59.6 0.361 2.9 0.0229 -- -- -- -- -0.0568 -- -- -- -- --
58.97 0.359 2.9 -- 0.102 -- -- -- -0.058 12.6 -- -- -- --
52 0.336 2.9 -- -- 1.58 -- -- -0.0396 -- 17.6 40 12 1.19
59.62 0.36 2.9 -- -- -- -- -- -0.0593 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.87 radiation 10.0 10 < th dose dependent rect. 12 1
3 35.43 radiation 10.0 30 < th dose independent rect. 11 2
11 39.70 wind 1.0 90 < th dose dependent rect. 10 1
18 47.37 wind 1.0 90 < th dose independent rect. 11 1
37 51.10 radiation 40.0 270 > th dose independent rect. 15 1
54 51.10 radiation 40.0 270 > th dose dependent rect. 15 1
74 51.57 wind 1.0 270 < th dose independent rect. 14 1
78 52.27 wind 1.0 270 < th dose dependent rect. 14 1
124 54.30 humidity 80.0 30 > th dose independent rect. 16 2
183 55.03 wind 1.0 90 < th dose dependent sin 21 NA
187 55.10 atmosphere 1005.0 90 > th dose independent rect. 16 2
211 55.40 temperature 25.0 30 > th dose dependent rect. 11 1
227 55.58 atmosphere 1005.0 90 > th dose dependent rect. 17 1
237 55.67 radiation 1.0 10 < th dose dependent rect. 17 1
241 55.70 radiation 1.0 30 < th dose independent rect. 17 1
280 55.93 temperature 25.0 10 > th dose independent rect. 17 1
282 55.94 wind 1.0 720 > th dose independent rect. 9 6
284 55.95 humidity 60.0 30 > th dose dependent rect. 17 1
301 56.04 radiation 10.0 720 < th dose dependent rect. 6 2
318 56.09 radiation 1.0 30 < th dose independent rect. 13 5
337 56.14 wind 1.0 720 > th dose independent rect. 12 9
352 56.20 temperature 30.0 90 < th dose independent rect. 17 1
355 56.21 wind 1.0 720 < th dose independent rect. 9 6
423 56.37 wind 3.0 90 < th dose independent rect. 17 1
446 56.41 radiation 10.0 720 < th dose independent rect. 7 2
449 56.41 temperature 25.0 90 > th dose dependent rect. 2 10
451 56.41 temperature 25.0 90 > th dose dependent rect. 22 14
453 56.42 radiation 10.0 10 < th dose independent rect. 11 16
459 56.42 temperature 25.0 90 > th dose dependent rect. 6 6
574 56.56 radiation 40.0 720 < th dose dependent rect. 23 10
587 56.59 wind 1.0 720 > th dose independent rect. 11 4
659 56.67 wind 1.0 720 > th dose independent rect. 13 1
663 56.67 humidity 70.0 90 > th dose independent rect. 10 8
704 56.70 radiation 1.0 30 < th dose independent rect. 6 12
707 56.71 precipitation 0.1 720 > th dose independent rect. 8 1
712 56.71 precipitation 0.1 720 > th dose dependent rect. 8 1
720 56.72 precipitation 0.1 720 > th dose independent rect. 7 3
727 56.72 precipitation 0.1 720 > th dose dependent rect. 7 3
741 56.74 wind 9.0 1440 < th dose independent rect. 18 1
767 56.78 wind 5.0 90 < th dose dependent rect. 17 1
807 56.84 radiation 10.0 720 < th dose independent rect. 23 10
813 56.85 radiation 30.0 270 < th dose independent rect. 14 1
837 56.87 temperature 25.0 270 > th dose dependent rect. 8 1
867 56.91 wind 1.0 270 < th dose independent sin 21 NA
878 56.92 temperature 25.0 270 > th dose independent rect. 8 1
887 56.93 radiation 40.0 720 < th dose independent rect. 6 5
894 56.93 humidity 90.0 720 > th dose dependent rect. 7 3
902 56.94 radiation 20.0 10 < th dose dependent rect. 8 5
956 56.99 radiation 40.0 720 < th dose independent rect. 21 14
973 57.01 wind 1.0 270 > th dose independent sin 21 NA