Os06g0701900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0701900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Auxin responsive SAUR protein family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.71	(0.0441)	R²	:	0.169
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	0.73	(0.11)	R²_dC	:	0.0802	R²_C	:	0.0843
β₃	:	1.27	(0.197)	R²_dE	:	0.0944	R²_E	:	0.0875
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.103	(0.0999)	R²_dN8	:	0.0027	R²_N8	:	-0.0116
σ	:	0.806
deviance	:	299.85
__

_____

C
peak time of C	:	19.7
E
wheather	:	atmosphere
threshold	:	1010
memory length	:	868
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
298.49	0.812	3.71	0.17	0.73	1.25	-0.394	-0.158	0.118	19.8	1010	867	--	--
298.51	0.805	3.71	0.171	0.73	1.24	-0.401	--	0.112	19.8	1010	866	--	--
298.93	0.805	3.71	0.18	0.73	1.25	--	-0.17	0.118	19.7	1010	862	--	--
298.96	0.805	3.71	0.184	0.728	1.24	--	--	0.112	19.8	1010	862	--	--
325.28	0.84	3.68	0.185	--	1.34	--	-0.069	0.119	--	1010	528	--	--
324.16	0.844	3.77	0.279	0.75	--	-0.352	--	-0.151	20.2	--	--	--	--
324.54	0.844	3.77	0.29	0.751	--	--	--	-0.152	20.2	--	--	--	--
325.28	0.84	3.69	0.183	--	1.33	--	--	0.113	--	1010	517	--	--
299.85	0.806	3.71	--	0.73	1.27	--	--	0.103	19.7	1010	868	--	--
355.64	0.881	3.75	0.284	--	--	--	--	-0.16	--	--	--	--	--
326.75	0.846	3.77	--	0.749	--	--	--	-0.184	20.2	--	--	--	--
326.15	0.841	3.69	--	--	1.36	--	--	0.0951	--	1010	521	--	--
357.77	0.883	3.75	--	--	--	--	--	-0.192	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	297.73	atmosphere	1010	720	< th	dose dependent	rect.	18	19
2	297.80	atmosphere	1010	1440	< th	dose dependent	rect.	18	14
6	297.83	atmosphere	1010	720	< th	dose dependent	rect.	15	21
16	297.93	atmosphere	1010	720	< th	dose dependent	rect.	18	22
17	297.94	atmosphere	1010	1440	< th	dose dependent	sin	10	NA
41	298.08	atmosphere	1010	1440	< th	dose dependent	rect.	24	5
42	298.08	atmosphere	1010	1440	< th	dose dependent	rect.	24	7
51	298.10	atmosphere	995	720	> th	dose dependent	rect.	19	20
124	298.37	atmosphere	995	720	> th	dose dependent	rect.	19	15
167	298.55	atmosphere	1010	1440	< th	dose dependent	rect.	3	2
219	298.71	atmosphere	1010	720	< th	dose dependent	rect.	11	23
231	298.76	atmosphere	995	720	> th	dose dependent	rect.	12	22
238	298.77	atmosphere	1010	720	< th	dose dependent	rect.	24	23
261	298.83	atmosphere	1010	720	< th	dose dependent	no	NA	NA
277	298.86	atmosphere	1010	1440	< th	dose dependent	rect.	9	23
291	298.90	atmosphere	1010	1440	< th	dose dependent	rect.	7	23
327	298.99	atmosphere	1010	1440	< th	dose dependent	rect.	3	23
347	299.05	atmosphere	1010	1440	< th	dose dependent	rect.	24	16
462	299.35	atmosphere	995	720	> th	dose dependent	sin	10	NA
568	299.55	atmosphere	1010	1440	< th	dose dependent	rect.	20	1
716	299.78	atmosphere	995	1440	> th	dose dependent	rect.	24	9
740	299.81	atmosphere	995	720	> th	dose dependent	rect.	1	23
785	299.86	atmosphere	995	720	> th	dose dependent	rect.	9	23
910	300.00	atmosphere	995	720	> th	dose dependent	no	NA	NA
953	300.05	atmosphere	995	1440	> th	dose dependent	rect.	3	2
985	300.08	radiation	1	4320	< th	dose independent	rect.	18	4