BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0293300 Os02g0293300|J090050D05
(75 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0293300 Region of unknown function XH domain containin... 150 1e-37
Os01g0126600 Similar to X1 (Fragment) 91 2e-19
Os03g0596400 Region of unknown function XH domain containin... 85 1e-17
Os01g0633200 Similar to X1 (Fragment) 84 3e-17
Os07g0112900 75 1e-14
Os05g0153200 Region of unknown function, putative Zinc fing... 70 3e-13
Os01g0147700 Region of unknown function, putative Zinc fing... 69 6e-13
Os01g0147400 Region of unknown function XH domain containin... 64 2e-11
>Os02g0293300 Region of unknown function XH domain containing protein
Length = 75
Score = 150 bits (380), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA
Sbjct: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
Query: 61 LQHVLEQWKLRRRRR 75
LQHVLEQWKLRRRRR
Sbjct: 61 LQHVLEQWKLRRRRR 75
>Os01g0126600 Similar to X1 (Fragment)
Length = 403
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 58/75 (77%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
+I++EDD KL LKE+ G+E+ VT ALLE+NEYN SG Y V ELWN KE+RKA+++E
Sbjct: 329 EILSEDDGKLCELKEEHGEEICAMVTKALLELNEYNPSGRYPVPELWNFKENRKATLKEV 388
Query: 61 LQHVLEQWKLRRRRR 75
+Q+VL QWK +R+R
Sbjct: 389 VQYVLNQWKKNKRKR 403
>Os03g0596400 Region of unknown function XH domain containing protein
Length = 163
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 50/74 (67%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
+II EDD KL L+ Q GDE V AL+E+NEYN SG Y V ELWN K++R A M EA
Sbjct: 88 EIIKEDDGKLQALRAQYGDEACNVVVKALVEMNEYNPSGMYPVPELWNFKQNRSAPMPEA 147
Query: 61 LQHVLEQWKLRRRR 74
++L+QWK ++R
Sbjct: 148 ASYLLKQWKTHKKR 161
>Os01g0633200 Similar to X1 (Fragment)
Length = 629
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 53/73 (72%)
Query: 3 INEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEALQ 62
I EDD KL LKE+ G+++Y+ V AL EINEYN SG + V ELWN K+ RKA+++E +Q
Sbjct: 557 IIEDDAKLQELKEEHGEDIYRLVRDALCEINEYNPSGRFPVGELWNFKDKRKATLKETVQ 616
Query: 63 HVLEQWKLRRRRR 75
VL QW+ RR+R
Sbjct: 617 FVLRQWRANRRKR 629
>Os07g0112900
Length = 96
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 50/69 (72%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
+I+ DD KL LKE+ G+EVY+ V TAL E+ EYN S V ELWN KE RKA+++EA
Sbjct: 16 EILCGDDGKLRELKEEHGEEVYRLVATALREMKEYNPSERCPVPELWNYKEKRKATLEEA 75
Query: 61 LQHVLEQWK 69
+Q V++QW+
Sbjct: 76 IQFVVKQWR 84
>Os05g0153200 Region of unknown function, putative Zinc finger, XS and XH domain
containing protein
Length = 617
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
++I EDDEKL LKE+ G EVY AVT AL E++ ++ G ELWN +E RKA +E
Sbjct: 543 KVIREDDEKLQQLKEEYGQEVYDAVTNALFELDMHSIGGRDPFLELWNYEEGRKAGTREV 602
Query: 61 LQHVLEQWKLRRRRR 75
+Q V++ +K +RRR
Sbjct: 603 IQQVIKLYKATKRRR 617
>Os01g0147700 Region of unknown function, putative Zinc finger, XS and XH domain
containing protein
Length = 700
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 44/60 (73%)
Query: 16 QLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEALQHVLEQWKLRRRRR 75
+ GD+V AV TAL E+NEYNASG YVV ELWN ++ RKA+M+E L+++ Q + +RR
Sbjct: 639 EYGDDVCNAVKTALSEVNEYNASGRYVVPELWNFRKGRKATMKEVLKYIFGQIETTSKRR 698
>Os01g0147400 Region of unknown function XH domain containing protein
Length = 411
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 2 IINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEAL 61
+++EDD+KL L + GD V AV A+ E+NEYN G + ++ELWN +E RKA+ +E +
Sbjct: 336 VVDEDDQKLRQLCKDYGDSVCNAVKAAMAELNEYNPRGRHTMNELWNFREGRKATTKEVV 395
Query: 62 QHVLEQWK 69
+++ +Q K
Sbjct: 396 KYISDQLK 403
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.128 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,451,146
Number of extensions: 72489
Number of successful extensions: 171
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 9
Length of query: 75
Length of database: 17,035,801
Length adjustment: 46
Effective length of query: 29
Effective length of database: 14,633,957
Effective search space: 424384753
Effective search space used: 424384753
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)