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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0596400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Region of unknown function XH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.79 (0.0453) R2 : 0.648
β1 : 4.45 (0.254) R2dD : 0.678 R2D : 0.261
β2 : 1.64 (0.0991) R2dC : 0.205 R2C : 0.197
β3 : 1.34 (0.208) R2dE : 0.097 R2E : -0.278
β4 : 4.38 (0.377) R2dD*C : 0.102 R2D*C : 0.0601
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.312 (0.118) R2dN8 : 0.0127 R2N8 : -0.0425
σ : 0.78
deviance : 280.43
__
_____
C
peak time of C : 0.305
E
wheather : temperature
threshold : 20.3
memory length : 22501
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
270.16 0.772 3.66 4.96 1.63 0.704 4.05 -6.02 0.41 0.289 24.9 3475 -- --
280.43 0.78 3.79 4.45 1.64 1.34 4.38 -- 0.312 0.305 20.3 22501 -- --
323.94 0.838 3.68 4.88 1.62 0.533 -- -5.85 0.433 0.469 24.41 2300 -- --
359.81 0.883 3.8 4.25 1.6 1.29 -- -- 0.312 0.534 20.21 22579 -- --
480.55 1.02 3.58 5.32 -- 0.238 -- -7.17 0.509 -- 24.4 2429 -- --
302.32 0.815 3.89 3.14 1.57 -- 4.28 -- -0.183 0.295 -- -- -- --
380.77 0.914 3.9 2.97 1.57 -- -- -- -0.206 0.61 -- -- -- --
512.57 1.06 3.81 3.19 -- 0.508 -- -- 0.0955 -- 24.4 2429 -- --
467.9 1.01 4.11 -- 1.54 -1.8 -- -- -1.12 0.622 21.1 47520 -- --
534.59 1.08 3.87 3.03 -- -- -- -- -0.179 -- -- -- -- --
613.48 1.16 3.98 -- 1.61 -- -- -- -0.537 0.698 -- -- -- --
615.52 1.16 4.09 -- -- -1.89 -- -- -1.13 -- 21.01 47520 -- --
776.25 1.3 3.95 -- -- -- -- -- -0.514 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 243.73 wind 3.0 43200 < th dose dependent rect. 23 13
4 244.08 wind 3.0 43200 < th dose dependent rect. 24 4
6 244.25 wind 7.0 14400 > th dose dependent rect. 10 1
7 244.52 wind 3.0 43200 < th dose dependent rect. 23 6
8 244.72 wind 3.0 43200 < th dose dependent rect. 21 15
15 245.29 wind 3.0 43200 < th dose dependent rect. 23 8
17 245.43 wind 3.0 43200 < th dose dependent rect. 23 10
18 245.47 wind 3.0 43200 < th dose dependent sin 8 NA
21 245.64 wind 3.0 43200 < th dose dependent rect. 21 12
26 245.86 wind 3.0 43200 < th dose independent rect. 6 1
27 245.94 wind 3.0 43200 < th dose dependent rect. 21 10
29 245.98 wind 3.0 43200 < th dose dependent rect. 3 10
42 246.55 wind 3.0 43200 < th dose dependent rect. 21 8
47 246.76 wind 9.0 14400 < th dose independent rect. 10 1
48 246.78 wind 3.0 43200 > th dose independent rect. 6 1
55 247.08 wind 9.0 14400 < th dose independent rect. 6 5
70 247.88 wind 3.0 43200 < th dose dependent rect. 6 1
80 248.38 wind 3.0 14400 < th dose dependent rect. 3 1
85 248.65 wind 3.0 43200 < th dose independent rect. 24 14
93 248.99 wind 1.0 43200 > th dose dependent rect. 6 1
94 249.02 wind 9.0 14400 > th dose independent rect. 9 2
96 249.04 wind 3.0 43200 < th dose independent rect. 24 7
113 249.72 wind 3.0 43200 > th dose independent rect. 12 1
115 249.80 wind 9.0 43200 < th dose dependent rect. 6 1
118 249.87 wind 3.0 43200 < th dose independent rect. 11 2
125 250.06 wind 3.0 43200 < th dose independent rect. 1 3
127 250.12 humidity 80.0 43200 > th dose independent rect. 4 2
128 250.16 wind 3.0 43200 < th dose independent sin 5 NA
131 250.22 wind 3.0 43200 < th dose independent rect. 19 12
132 250.22 wind 3.0 43200 < th dose independent rect. 18 15
148 250.52 wind 5.0 43200 < th dose dependent rect. 11 2
154 250.61 wind 7.0 14400 < th dose independent rect. 12 1
155 250.66 humidity 90.0 14400 > th dose independent rect. 2 8
156 250.68 wind 3.0 43200 < th dose independent sin 9 NA
159 250.70 wind 7.0 14400 > th dose independent rect. 12 1
173 250.89 humidity 80.0 43200 < th dose independent rect. 4 1
174 250.92 wind 3.0 43200 < th dose independent rect. 19 19
177 250.97 precipitation 0.1 14400 > th dose dependent rect. 13 1
178 250.98 wind 3.0 43200 > th dose independent rect. 1 13
192 251.10 wind 3.0 43200 > th dose independent rect. 1 6
194 251.13 humidity 80.0 14400 > th dose independent rect. 13 3
204 251.25 wind 3.0 43200 < th dose dependent rect. 1 2
210 251.37 wind 3.0 43200 < th dose dependent rect. 6 3
248 251.88 humidity 80.0 14400 < th dose independent rect. 13 2
262 252.08 wind 3.0 43200 > th dose independent sin 4 NA
301 252.53 wind 1.0 43200 > th dose independent rect. 1 1
308 252.55 wind 3.0 43200 > th dose independent rect. 5 9
326 252.73 wind 3.0 43200 > th dose independent rect. 18 15
357 253.00 wind 3.0 43200 > th dose independent rect. 19 13
394 253.31 wind 3.0 43200 > th dose independent rect. 1 3
396 253.31 wind 7.0 14400 > th dose dependent rect. 12 1
397 253.32 wind 1.0 43200 < th dose independent rect. 1 1
403 253.35 wind 3.0 43200 > th dose independent sin 10 NA
419 253.47 wind 3.0 43200 > th dose independent rect. 19 19
442 253.72 humidity 80.0 43200 < th dose dependent rect. 4 2
465 253.92 humidity 80.0 43200 < th dose dependent rect. 24 6
471 253.97 humidity 80.0 43200 < th dose dependent rect. 2 4
477 254.03 wind 3.0 14400 < th dose independent rect. 3 1
514 254.31 humidity 80.0 43200 < th dose dependent rect. 2 1
535 254.45 wind 1.0 43200 > th dose dependent rect. 12 1
550 254.56 humidity 80.0 43200 < th dose independent rect. 24 1
558 254.64 precipitation 0.1 14400 > th dose independent rect. 13 1
584 254.77 wind 7.0 14400 > th dose dependent rect. 5 8
586 254.83 precipitation 0.1 14400 < th dose independent rect. 13 1
588 254.83 precipitation 0.1 14400 < th dose dependent rect. 13 1
599 254.93 wind 7.0 14400 > th dose dependent rect. 7 6
621 255.06 radiation 1.0 14400 < th dose dependent rect. 19 10
666 255.38 humidity 80.0 14400 > th dose dependent rect. 13 1
672 255.40 precipitation 0.1 43200 > th dose dependent rect. 19 1
681 255.45 humidity 80.0 14400 > th dose independent rect. 9 7
772 256.09 humidity 90.0 14400 > th dose dependent rect. 2 8
831 256.54 humidity 80.0 14400 < th dose independent rect. 9 7
887 257.04 wind 7.0 14400 > th dose independent rect. 5 8
925 257.26 wind 3.0 43200 < th dose independent rect. 24 23
945 257.41 wind 7.0 14400 < th dose independent rect. 5 8
950 257.47 humidity 90.0 14400 > th dose dependent rect. 2 19
969 257.55 humidity 90.0 14400 > th dose independent rect. 19 15
970 257.55 humidity 90.0 14400 > th dose dependent rect. 2 16
989 257.68 wind 3.0 43200 < th dose independent no NA NA
993 257.69 wind 3.0 43200 < th dose independent rect. 10 23