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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0147400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Region of unknown function XH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.1 (0.0494) R2 : 0.346
β1 : 1.2 (0.181) R2dD : 0.0656 R2D : 0.0505
β2 : 2.05 (0.15) R2dC : 0.375 R2C : 0.0802
β3 : -1.63 (0.171) R2dE : 0.184 R2E : -0.0874
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.322 (0.105) R2dN8 : 0.0183 R2N8 : 0.00322
σ : 0.923
deviance : 392.58
__
_____
C
peak time of C : 16.5
E
wheather : radiation
threshold : 20
memory length : 23
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 14.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
382.91 0.919 4.11 1.19 2.1 -1.7 -0.759 2.24 0.31 16.7 20.01 27 13.8 --
393.01 0.923 4.09 1.23 1.96 -1.59 -0.123 -- 0.34 16.2 20 26 14.6 --
383.98 0.913 4.12 1.21 2.15 -1.75 -- 1.96 0.318 16.8 20 23 13.5 --
392.58 0.923 4.1 1.2 2.05 -1.63 -- -- 0.322 16.5 20 23 14.1 --
436.97 0.974 4.09 1.37 -- -1.63 -- 0.741 0.336 -- 48.34 633 9.49 --
432.1 0.975 4.06 1.26 1.46 -- -0.408 -- 0.374 14.2 -- -- -- --
432.71 0.974 4.06 1.25 1.46 -- -- -- 0.372 14.3 -- -- -- --
432.71 0.969 4.07 1.24 -- -1.46 -- -- 0.368 -- 880.6 236 5.68 --
430.23 0.966 4.13 -- 2.09 -1.7 -- -- 0.198 16.6 21.79 26 13.9 --
560.14 1.11 4.07 1.19 -- -- -- -- 0.337 -- -- -- -- --
473.76 1.02 4.09 -- 1.44 -- -- -- 0.233 14.3 -- -- -- --
471.52 1.01 4.12 -- -- -1.69 -- -- 0.139 -- 80.25 840 11.6 --
597.27 1.14 4.1 -- -- -- -- -- 0.205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 382.09 temperature 10.0 270 > th dose dependent rect. 7 8
2 383.61 radiation 20.0 30 < th dose dependent sin 20 NA
3 384.20 temperature 25.0 270 > th dose independent rect. 8 7
13 385.42 radiation 20.0 10 < th dose dependent rect. 6 16
22 386.64 radiation 10.0 10 < th dose independent rect. 5 17
29 386.95 radiation 10.0 90 < th dose independent rect. 5 18
33 387.14 radiation 20.0 90 < th dose dependent rect. 5 16
34 387.15 radiation 10.0 90 < th dose independent rect. 5 16
35 387.31 radiation 20.0 90 < th dose dependent rect. 5 18
40 387.75 temperature 25.0 270 < th dose independent rect. 2 17
44 387.93 radiation 20.0 90 < th dose independent rect. 15 20
51 388.27 radiation 20.0 90 < th dose independent rect. 13 22
65 388.62 atmosphere 1000.0 270 > th dose independent rect. 2 7
69 388.72 radiation 10.0 30 < th dose independent sin 20 NA
73 388.94 radiation 40.0 270 < th dose independent rect. 13 8
95 389.73 temperature 20.0 10 > th dose dependent rect. 9 8
99 389.77 wind 7.0 270 < th dose independent rect. 9 17
115 390.29 radiation 20.0 270 < th dose dependent rect. 2 19
116 390.38 radiation 20.0 270 < th dose dependent rect. 3 16
134 390.80 radiation 10.0 30 > th dose independent sin 20 NA
139 390.99 radiation 20.0 90 < th dose independent rect. 13 10
166 391.49 radiation 20.0 270 < th dose independent rect. 15 16
176 391.72 radiation 40.0 270 < th dose dependent rect. 13 20
180 391.79 wind 7.0 270 < th dose independent rect. 7 9
192 391.97 radiation 10.0 270 < th dose independent rect. 2 19
218 392.52 radiation 40.0 270 < th dose dependent rect. 15 16
221 392.58 radiation 40.0 90 < th dose dependent rect. 13 10
239 392.89 radiation 30.0 90 < th dose dependent rect. 13 22
249 393.04 radiation 10.0 30 > th dose independent rect. 9 9
274 393.23 radiation 20.0 90 < th dose independent rect. 15 8
279 393.35 atmosphere 1000.0 10 > th dose independent rect. 5 7
289 393.55 radiation 10.0 270 > th dose independent rect. 8 7
295 393.61 atmosphere 1000.0 90 > th dose independent rect. 5 16
296 393.61 radiation 40.0 90 < th dose dependent rect. 15 18
310 393.77 temperature 10.0 270 > th dose dependent rect. 8 18
312 393.78 radiation 20.0 10 > th dose independent rect. 12 23
318 393.81 radiation 40.0 270 < th dose dependent rect. 13 8
327 393.87 radiation 30.0 90 < th dose dependent rect. 15 20
339 394.03 radiation 1.0 90 < th dose dependent rect. 21 15
374 394.26 atmosphere 1000.0 10 > th dose independent rect. 5 17
401 394.46 precipitation 0.1 270 < th dose independent rect. 2 7
402 394.46 precipitation 0.1 270 < th dose dependent rect. 2 7
417 394.57 wind 7.0 270 < th dose independent rect. 7 20
424 394.61 temperature 10.0 10 > th dose dependent rect. 9 20
478 395.02 radiation 20.0 10 < th dose dependent rect. 8 14
481 395.04 radiation 20.0 10 < th dose independent rect. 14 20
488 395.09 radiation 10.0 270 > th dose independent sin 1 NA
496 395.15 wind 7.0 270 < th dose independent rect. 21 17
508 395.23 humidity 50.0 270 > th dose dependent rect. 2 7
520 395.34 radiation 40.0 270 < th dose dependent rect. 2 8
543 395.53 atmosphere 995.0 270 > th dose dependent rect. 2 7
546 395.58 precipitation 0.1 270 < th dose independent rect. 15 16
548 395.58 precipitation 0.1 270 < th dose dependent rect. 15 16
551 395.61 radiation 40.0 90 < th dose dependent rect. 15 8
573 395.79 radiation 20.0 10 < th dose independent rect. 5 22
601 395.97 wind 9.0 270 < th dose dependent rect. 9 17
617 396.06 wind 9.0 270 < th dose independent rect. 2 7
618 396.06 temperature 10.0 270 > th dose independent rect. 2 7
620 396.06 humidity 50.0 270 > th dose independent rect. 2 7
622 396.06 atmosphere 1015.0 270 < th dose independent rect. 2 7
623 396.06 temperature 10.0 270 > th dose independent rect. 9 17
628 396.11 temperature 30.0 270 < th dose dependent rect. 2 17
641 396.18 atmosphere 1000.0 270 > th dose independent rect. 3 4
642 396.19 precipitation 0.1 270 < th dose independent rect. 2 19
643 396.19 precipitation 0.1 270 < th dose dependent rect. 2 19
647 396.22 atmosphere 995.0 270 > th dose independent rect. 7 8
717 396.63 radiation 20.0 10 < th dose independent rect. 13 9
721 396.65 temperature 10.0 270 > th dose independent rect. 7 8
722 396.65 atmosphere 1015.0 270 < th dose independent rect. 7 8
723 396.65 temperature 10.0 270 > th dose independent rect. 15 16
727 396.68 precipitation 0.1 270 < th dose independent rect. 7 8
728 396.68 precipitation 0.1 270 < th dose dependent rect. 7 8
750 396.78 radiation 40.0 270 < th dose independent rect. 2 7
753 396.79 temperature 30.0 270 < th dose independent rect. 2 7
775 396.90 wind 7.0 270 < th dose independent rect. 21 5
785 396.99 radiation 1.0 90 < th dose independent rect. 21 15
816 397.19 wind 1.0 270 > th dose independent rect. 14 7
822 397.21 radiation 30.0 10 < th dose dependent rect. 5 22
831 397.28 wind 1.0 270 > th dose independent rect. 7 8
860 397.36 humidity 50.0 270 > th dose independent rect. 7 8
871 397.42 temperature 10.0 270 > th dose independent rect. 14 7
872 397.42 temperature 10.0 270 > th dose independent rect. 21 17
873 397.42 atmosphere 995.0 270 > th dose independent rect. 21 17
877 397.43 radiation 1.0 10 < th dose dependent rect. 22 10
888 397.46 temperature 30.0 90 < th dose dependent rect. 4 17
894 397.48 radiation 40.0 270 < th dose independent rect. 2 19
899 397.51 temperature 30.0 10 < th dose dependent rect. 5 17
924 397.62 temperature 15.0 270 > th dose independent rect. 2 19
928 397.64 atmosphere 1015.0 270 < th dose independent rect. 2 19
942 397.68 temperature 20.0 270 > th dose independent rect. 5 1
943 397.68 humidity 50.0 270 > th dose independent rect. 21 17
948 397.70 precipitation 0.1 270 < th dose independent rect. 9 17
950 397.70 humidity 50.0 270 > th dose dependent rect. 21 5
951 397.70 precipitation 0.1 270 < th dose dependent rect. 9 17
952 397.71 temperature 10.0 270 > th dose independent rect. 21 5
953 397.71 temperature 30.0 270 < th dose independent rect. 21 5
954 397.71 humidity 50.0 270 > th dose independent rect. 21 5
957 397.71 atmosphere 995.0 270 > th dose independent rect. 21 5
958 397.71 radiation 1.0 270 < th dose independent rect. 21 5
964 397.71 radiation 1.0 270 < th dose dependent rect. 21 5
975 397.76 wind 9.0 270 < th dose independent rect. 15 16
999 397.85 atmosphere 1015.0 270 < th dose independent rect. 14 7