BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0147400 Os01g0147400|Os01g0147400
(411 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0147400 Region of unknown function XH domain containin... 677 0.0
Os01g0147700 Region of unknown function, putative Zinc fing... 221 9e-58
Os01g0126600 Similar to X1 (Fragment) 141 8e-34
Os01g0633200 Similar to X1 (Fragment) 132 3e-31
Os03g0596400 Region of unknown function XH domain containin... 120 3e-27
Os05g0153200 Region of unknown function, putative Zinc fing... 117 2e-26
Os12g0572500 Region of unknown function XH domain containin... 102 4e-22
>Os01g0147400 Region of unknown function XH domain containing protein
Length = 411
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/411 (84%), Positives = 347/411 (84%)
Query: 1 MADAEAETHNAGGGELLVWPWTGILXXXXXXXXXXXXXXXXLAFHAHQHFAGVPTTALQE 60
MADAEAETHNAGGGELLVWPWTGIL LAFHAHQHFAGVPTTALQE
Sbjct: 1 MADAEAETHNAGGGELLVWPWTGILATTTDDDDATADAASTLAFHAHQHFAGVPTTALQE 60
Query: 61 ATAGDXXXXXXXXXXXXKSWAGLRDAMSLPGRFPXXXXXXXXXXXXXXXXXXXXVYGWLA 120
ATAGD KSWAGLRDAMSLPGRFP VYGWLA
Sbjct: 61 ATAGDGHHHHFLVLHFGKSWAGLRDAMSLPGRFPGAGRREWRRRRRGEGATAGAVYGWLA 120
Query: 121 GEDATSGAVYGWPAGEDDLHDGDGLVGRFLRDAGGAARSAEDVERDEGRQDMEAIYAKLN 180
GEDATSGAVYGWPAGEDDLHDGDGLVGRFLRDAGGAARSAEDVERDEGRQDMEAIYAKLN
Sbjct: 121 GEDATSGAVYGWPAGEDDLHDGDGLVGRFLRDAGGAARSAEDVERDEGRQDMEAIYAKLN 180
Query: 181 QLEKQLEQRQSLESIIRQMNMNLQAGGSLRKEDHEHIYSIMICLRTIVDEEKEMLVDSCA 240
QLEKQLEQRQSLESIIRQMNMNLQAGGSLRKEDHEHIYSIMICLRTIVDEEKEMLVDSCA
Sbjct: 181 QLEKQLEQRQSLESIIRQMNMNLQAGGSLRKEDHEHIYSIMICLRTIVDEEKEMLVDSCA 240
Query: 241 EIMKRLRTNSDELKEYRQELIKGVENMTITTSTIIGIKRMGELDERPFHLACKRKHREDD 300
EIMKRLRTNSDELKEYRQELIKGVENMTITTSTIIGIKRMGELDERPFHLACKRKHREDD
Sbjct: 241 EIMKRLRTNSDELKEYRQELIKGVENMTITTSTIIGIKRMGELDERPFHLACKRKHREDD 300
Query: 301 PRGKAAMLISYWQEELKNPSWHPFKIIXXXXXXXXXXXXXXXXLRQLCKDYGDSVCNAVK 360
PRGKAAMLISYWQEELKNPSWHPFKII LRQLCKDYGDSVCNAVK
Sbjct: 301 PRGKAAMLISYWQEELKNPSWHPFKIIQVDGEDKGVVDEDDQKLRQLCKDYGDSVCNAVK 360
Query: 361 AAMAELNEYNPRGRHTMNELWNFREGRKATTKEVVKYISDQLKTNSSQSDN 411
AAMAELNEYNPRGRHTMNELWNFREGRKATTKEVVKYISDQLKTNSSQSDN
Sbjct: 361 AAMAELNEYNPRGRHTMNELWNFREGRKATTKEVVKYISDQLKTNSSQSDN 411
>Os01g0147700 Region of unknown function, putative Zinc finger, XS and XH domain
containing protein
Length = 700
Score = 221 bits (562), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 119/253 (47%), Positives = 167/253 (66%), Gaps = 3/253 (1%)
Query: 158 RSAEDVER--DEGRQDMEAIYAKLNQLEKQLEQRQSLESIIRQMNMNLQAGGSLRKEDHE 215
R+ EDV + ++ +++ E + A++ QLEK+L ++Q LE + ++N LQ L +D
Sbjct: 446 RADEDVMKLVEDQKREKEDVLARMLQLEKELHEKQQLELEVTRLNGTLQVMKHLEGDDDG 505
Query: 216 HIYSIMICLRTIVDEEKEMLVDSCAEIMKRLRTNSDELKEYRQELIKGVENMTITTSTII 275
I+ M L ++ EK+ L + E++K+ R ++DEL+E R+ELI G+E+M +T T I
Sbjct: 506 DIHDKMEKLSERLEHEKKRLEELSGELVKKERESNDELQEARKELIMGLEDM-LTGRTAI 564
Query: 276 GIKRMGELDERPFHLACKRKHREDDPRGKAAMLISYWQEELKNPSWHPFKIIXXXXXXXX 335
GIKRMGELDE+PF ACKRK+ DD KAA L+S WQEE+K PSWHP+KII
Sbjct: 565 GIKRMGELDEKPFQNACKRKYGNDDYETKAAELVSSWQEEIKKPSWHPYKIITVDGEDKE 624
Query: 336 XXXXXXXXLRQLCKDYGDSVCNAVKAAMAELNEYNPRGRHTMNELWNFREGRKATTKEVV 395
LR L +YGD VCNAVK A++E+NEYN GR+ + ELWNFR+GRKAT KEV+
Sbjct: 625 VVDDDDTKLRHLWIEYGDDVCNAVKTALSEVNEYNASGRYVVPELWNFRKGRKATMKEVL 684
Query: 396 KYISDQLKTNSSQ 408
KYI Q++T S +
Sbjct: 685 KYIFGQIETTSKR 697
>Os01g0126600 Similar to X1 (Fragment)
Length = 403
Score = 141 bits (356), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 142/243 (58%), Gaps = 4/243 (1%)
Query: 166 DEGRQDMEAIYAKLNQLEKQLEQRQSLESIIRQMNMNLQAGGSLR-KEDHEHIYSIMICL 224
+E +++ +A K+ +LE+QL +Q LE I+Q+ L+ + KED E I
Sbjct: 158 EEHKREKQAALDKILKLEQQLNAKQKLELEIQQLQGKLEVMKHMPGKEDSEAKSKIHELS 217
Query: 225 RTIVDEEKEM-LVDSCAE-IMKRLRTNSDELKEYRQELIKGVENMTITTSTIIGIKRMGE 282
+ D+ EM ++S + ++ + R ++DEL+ R+ LI+G +++ I T IGIKRMG
Sbjct: 218 EELKDKYAEMESIESLNQALVIKERQSNDELQHARKVLIEGFQDI-IVGRTNIGIKRMGV 276
Query: 283 LDERPFHLACKRKHREDDPRGKAAMLISYWQEELKNPSWHPFKIIXXXXXXXXXXXXXXX 342
+D + F A K++ E+D AA L S W+ E+KN WHPF+++
Sbjct: 277 IDFKAFTNAYKQRSLEEDADVSAAELCSLWENEIKNSDWHPFRVVMVDGKEMEILSEDDG 336
Query: 343 XLRQLCKDYGDSVCNAVKAAMAELNEYNPRGRHTMNELWNFREGRKATTKEVVKYISDQL 402
L +L +++G+ +C V A+ ELNEYNP GR+ + ELWNF+E RKAT KEVV+Y+ +Q
Sbjct: 337 KLCELKEEHGEEICAMVTKALLELNEYNPSGRYPVPELWNFKENRKATLKEVVQYVLNQW 396
Query: 403 KTN 405
K N
Sbjct: 397 KKN 399
>Os01g0633200 Similar to X1 (Fragment)
Length = 629
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 138/249 (55%), Gaps = 19/249 (7%)
Query: 167 EGRQDMEAIYAKLNQLEKQLEQRQSLESIIRQMNMNLQAGGSLRKEDHEHIYSIMICLRT 226
E +++ EA K+ +LE+Q++ +Q LE I+Q+ L+ + ++ L+
Sbjct: 386 EHKREKEAAVKKILKLEQQVDAKQKLELDIQQLKGKLEVMKHMPGDEDS-------ALKN 438
Query: 227 IVDEEKEMLVDSCAEI--MKRL--------RTNSDELKEYRQELIKGVENMTITTSTIIG 276
+DE E L + E+ M+ L R ++ E+++ R+EL G+ ++ + + IG
Sbjct: 439 KIDELSEELQEKMDELDAMESLNQTLVIKERKSNTEMQDARKELENGLLDL-LDGQSHIG 497
Query: 277 IKRMGELDERPFHLACKRKHREDDPRGKAAMLISYWQEELKNPSWHPFKIIXXXXXXXXX 336
IKRMGELD F AC++ E+D AA+L S WQ E+KNP WHPF+ +
Sbjct: 498 IKRMGELDLEAFSKACRKMSSEEDAEITAAILCSKWQAEIKNPDWHPFRFV-LVDGQEKE 556
Query: 337 XXXXXXXLRQLCKDYGDSVCNAVKAAMAELNEYNPRGRHTMNELWNFREGRKATTKEVVK 396
L++L +++G+ + V+ A+ E+NEYNP GR + ELWNF++ RKAT KE V+
Sbjct: 557 IIEDDAKLQELKEEHGEDIYRLVRDALCEINEYNPSGRFPVGELWNFKDKRKATLKETVQ 616
Query: 397 YISDQLKTN 405
++ Q + N
Sbjct: 617 FVLRQWRAN 625
>Os03g0596400 Region of unknown function XH domain containing protein
Length = 163
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 261 IKGVENMTITTSTIIGIKRMGELDERPFHLACKRKHREDDPRGKAAMLISYWQEELKNPS 320
++G+E M S IIG+KRMGELD++ F+ ACK K + + K A++ S W++E+ P
Sbjct: 17 VQGLEKMAGVRS-IIGVKRMGELDQKAFYNACKNKMPNN--KMKLALVCSKWEDEITKPE 73
Query: 321 WHPFKIIXXXXXXXXXXXXXXXXLRQLCKDYGDSVCNAVKAAMAELNEYNPRGRHTMNEL 380
WHPFK+I L+ L YGD CN V A+ E+NEYNP G + + EL
Sbjct: 74 WHPFKVIETAGQTKEIIKEDDGKLQALRAQYGDEACNVVVKALVEMNEYNPSGMYPVPEL 133
Query: 381 WNFREGRKATTKEVVKYISDQLKTNSSQS 409
WNF++ R A E Y+ Q KT+ ++
Sbjct: 134 WNFKQNRSAPMPEAASYLLKQWKTHKKRN 162
>Os05g0153200 Region of unknown function, putative Zinc finger, XS and XH domain
containing protein
Length = 617
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 131/239 (54%), Gaps = 7/239 (2%)
Query: 166 DEGRQDMEAIYAKLNQLEKQLEQRQSLESIIRQMNMNLQAGGSLRKEDHEHIYSIMICLR 225
+E ++ EA +L +QL+++Q LE I + LQ + + + + L
Sbjct: 369 EEHNREKEATLNSNMRLHEQLDRKQKLELEIAHLKGKLQVTKHTQGTEDSDLEKTIEALT 428
Query: 226 TIVDEEKEML--VDSCAE--IMKRLRTNSDELKEYRQELIKGVENMT--ITTSTIIGIKR 279
++E+ E + +D+ + I+K R+ DEL+E R+ +I ++ + I + IGIKR
Sbjct: 429 NELEEKIEDMNYMDNMNQTLILKEKRS-KDELQEARKLVIDSLQRLPSDIRSQAQIGIKR 487
Query: 280 MGELDERPFHLACKRKHREDDPRGKAAMLISYWQEELKNPSWHPFKIIXXXXXXXXXXXX 339
+GELD + F AC+R+ ED ++++L S WQ E+K+P WHPFK +
Sbjct: 488 IGELDLKVFSDACRRRFSEDFAEVESSVLCSKWQNEIKDPEWHPFKSVWVNGKESKVIRE 547
Query: 340 XXXXLRQLCKDYGDSVCNAVKAAMAELNEYNPRGRHTMNELWNFREGRKATTKEVVKYI 398
L+QL ++YG V +AV A+ EL+ ++ GR ELWN+ EGRKA T+EV++ +
Sbjct: 548 DDEKLQQLKEEYGQEVYDAVTNALFELDMHSIGGRDPFLELWNYEEGRKAGTREVIQQV 606
>Os12g0572500 Region of unknown function XH domain containing protein
Length = 377
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Query: 246 LRTNSDELKEYRQELIKGVENMTITTSTIIGIKRMGELDERPFHLACKRKHREDDPRGKA 305
L + D+L+ R+ELIKG ++ +GIK MG+L+E+ F +AC K ++ +
Sbjct: 207 LVSKDDDLEAVREELIKGFLDID-NGGRKLGIKEMGQLNEKVFQIACLAKLPPEEVGEAS 265
Query: 306 AMLISYWQEELKNPSWHPFKIIXXXXXXXXXXXXXXXXLRQLCKDYGDSVCNAVKAAMAE 365
L S WQ++L + SW+PFK I L++L +DYG+ AV A+ E
Sbjct: 266 YELYSSWQKQLSDLSWNPFKTITVDGNGKEIVNVDDEKLQELKRDYGEGAHKAVMNALME 325
Query: 366 LNEYNPRG-RHTMNELWNFREGRKATTKEVVKYISDQLK 403
+ EYN R ELWN+++GRKAT +E V+Y+ +Q+K
Sbjct: 326 MKEYNVLADRSIAYELWNYKDGRKATLRECVEYVCNQVK 364
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,295,041
Number of extensions: 455399
Number of successful extensions: 1291
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1277
Number of HSP's successfully gapped: 7
Length of query: 411
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 308
Effective length of database: 11,657,759
Effective search space: 3590589772
Effective search space used: 3590589772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)