Os01g0633200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to X1 (Fragment).
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Os01g0633200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to X1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.8 | 0.187 | 12 | 0.546 | 0.338 | -0.734 | 0.233 | -0.503 | 0.276 | 3.53 | 29.27 | 100 | -- | -- |
| 15.99 | 0.186 | 12 | 0.46 | 0.336 | -0.725 | 0.0548 | -- | 0.254 | 3.78 | 29.13 | 127 | -- | -- |
| 15.69 | 0.184 | 12 | 0.532 | 0.299 | -0.729 | -- | -0.444 | 0.263 | 4.43 | 27.45 | 243 | -- | -- |
| 15.95 | 0.186 | 12.1 | 0.457 | 0.306 | -0.716 | -- | -- | 0.246 | 4.51 | 27.87 | 250 | -- | -- |
| 17.04 | 0.192 | 12 | 0.546 | -- | -0.708 | -- | -0.613 | 0.282 | -- | 26.11 | 1319 | -- | -- |
| 22.97 | 0.225 | 12 | 0.638 | 0.108 | -- | -0.0317 | -- | 0.4 | 4.87 | -- | -- | -- | -- |
| 22.97 | 0.224 | 12 | 0.638 | 0.108 | -- | -- | -- | 0.4 | 4.87 | -- | -- | -- | -- |
| 17.55 | 0.195 | 12.1 | 0.452 | -- | -0.637 | -- | -- | 0.259 | -- | 26.92 | 1265 | -- | -- |
| 21.02 | 0.214 | 12.1 | -- | 0.278 | -0.821 | -- | -- | 0.168 | 4.3 | 27.28 | 239 | -- | -- |
| 23.59 | 0.227 | 12 | 0.642 | -- | -- | -- | -- | 0.403 | -- | -- | -- | -- | -- |
| 33.71 | 0.272 | 12 | -- | 0.119 | -- | -- | -- | 0.329 | 4.71 | -- | -- | -- | -- |
| 20.48 | 0.211 | 12.1 | -- | -- | -0.85 | -- | -- | 0.172 | -- | 23.77 | 6856 | -- | -- |
| 34.47 | 0.274 | 12 | -- | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 6 | 15.14 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 21 | 15.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 28 | 15.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 36 | 15.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 40 | 15.87 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 43 | 15.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 65 | 16.01 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 75 | 16.07 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 78 | 16.08 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 81 | 16.10 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 99 | 16.20 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 101 | 16.21 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 113 | 16.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 131 | 16.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 135 | 16.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 158 | 16.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 216 | 16.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 244 | 16.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 268 | 16.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 270 | 16.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 283 | 16.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 299 | 16.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 19 |
| 308 | 16.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 17 |
| 316 | 16.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 321 | 16.63 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 322 | 16.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 323 | 16.63 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 340 | 16.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 7 |
| 341 | 16.64 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 7 |
| 382 | 16.66 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 416 | 16.67 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 420 | 16.67 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 432 | 16.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 502 | 16.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 503 | 16.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 23 |
| 538 | 16.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 667 | 16.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 668 | 16.74 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 2 |
| 783 | 16.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 842 | 16.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 845 | 16.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |