Os05g0153200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Region of unknown function, putative Zinc finger, XS and XH domain containing protein.
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Os05g0153200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Region of unknown function, putative Zinc finger, XS and XH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 361.7 | 0.894 | 2.88 | 1.01 | 0.0737 | 0.505 | 1.77 | 5.11 | 0.00421 | 18.2 | 24.5 | 4223 | -- | -- |
| 370.06 | 0.896 | 3.03 | -0.237 | 0.0663 | 0.99 | 1.7 | -- | -0.235 | 18.3 | 25.79 | 4144 | -- | -- |
| 366.94 | 0.892 | 2.84 | 1.19 | 0.167 | 0.286 | -- | 6.15 | 0.067 | 23.6 | 25.92 | 4679 | -- | -- |
| 375.58 | 0.903 | 3.04 | -0.24 | 0.103 | 0.926 | -- | -- | -0.255 | 0.237 | 26.05 | 4656 | -- | -- |
| 368.52 | 0.894 | 2.85 | 1.16 | -- | 0.317 | -- | 5.91 | 0.0469 | -- | 26.1 | 4680 | -- | -- |
| 399.91 | 0.938 | 3.03 | 0.0822 | 0.0733 | -- | 1.61 | -- | -0.22 | 18.8 | -- | -- | -- | -- |
| 403.95 | 0.941 | 3.03 | 0.0482 | 0.214 | -- | -- | -- | -0.219 | 23.5 | -- | -- | -- | -- |
| 377.08 | 0.904 | 3.03 | -0.259 | -- | 0.941 | -- | -- | -0.224 | -- | 26.1 | 4660 | -- | -- |
| 376.8 | 0.904 | 3.03 | -- | 0.174 | 0.854 | -- | -- | -0.199 | 23.9 | 26.14 | 4644 | -- | -- |
| 406.82 | 0.942 | 3.02 | 0.0539 | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
| 404.01 | 0.94 | 3.03 | -- | 0.215 | -- | -- | -- | -0.225 | 23.5 | -- | -- | -- | -- |
| 378.63 | 0.906 | 3.02 | -- | -- | 0.876 | -- | -- | -0.194 | -- | 26.23 | 4663 | -- | -- |
| 406.9 | 0.942 | 3.02 | -- | -- | -- | -- | -- | -0.223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 359.13 | radiation | 20 | 90 | > th | dose dependent | rect. | 16 | 16 |
| 2 | 359.52 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 3 | 359.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 5 | 359.99 | radiation | 30 | 10 | > th | dose independent | rect. | 7 | 2 |
| 77 | 360.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 80 | 360.72 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 1 | 17 |
| 81 | 360.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 82 | 360.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 91 | 360.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 110 | 361.02 | temperature | 25 | 4320 | > th | dose dependent | sin | 9 | NA |
| 135 | 361.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 21 |
| 151 | 361.45 | humidity | 90 | 90 | < th | dose dependent | rect. | 2 | 5 |
| 158 | 361.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 177 | 361.63 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 198 | 361.71 | radiation | 20 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 219 | 361.81 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 226 | 361.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 22 |
| 235 | 361.88 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 15 |
| 238 | 361.90 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 242 | 361.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 249 | 361.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 21 |
| 276 | 362.00 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 277 | 362.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 2 |
| 281 | 362.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 285 | 362.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 16 |
| 297 | 362.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 312 | 362.05 | temperature | 25 | 4320 | > th | dose dependent | sin | 15 | NA |
| 365 | 362.14 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 13 |
| 379 | 362.17 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 11 |
| 415 | 362.23 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 470 | 362.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 11 |
| 475 | 362.34 | humidity | 80 | 90 | < th | dose independent | rect. | 2 | 5 |
| 489 | 362.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 508 | 362.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 546 | 362.48 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 589 | 362.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 8 |
| 675 | 362.74 | radiation | 20 | 10 | > th | dose dependent | rect. | 7 | 2 |
| 718 | 362.84 | humidity | 80 | 90 | < th | dose independent | rect. | 24 | 7 |
| 741 | 362.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 753 | 362.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 760 | 363.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 804 | 363.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 10 |
| 810 | 363.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 819 | 363.22 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 6 |
| 823 | 363.22 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 16 |
| 894 | 363.34 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 6 |
| 963 | 363.53 | temperature | 30 | 4320 | < th | dose independent | sin | 6 | NA |