BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0209000 Os02g0209000|J065213L11
(179 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0209000 WD40-like domain containing protein 376 e-105
Os06g0143900 Similar to Coatomer protein complex, beta prime 341 2e-94
AK110120 258 1e-69
AK110077 136 8e-33
Os09g0127800 Similar to Coatomer alpha subunit 135 2e-32
Os03g0711400 Similar to Coatomer alpha subunit 135 2e-32
Os01g0780400 WD40-like domain containing protein 67 7e-12
Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3... 65 2e-11
>Os02g0209000 WD40-like domain containing protein
Length = 179
Score = 376 bits (965), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MPLRLDIKRKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 60
MPLRLDIKRKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV
Sbjct: 1 MPLRLDIKRKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 60
Query: 61 RSSKFITRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDD 120
RSSKFITRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDD
Sbjct: 61 RSSKFITRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDD 120
Query: 121 MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVCDFVPYICLA 179
MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVCDFVPYICLA
Sbjct: 121 MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVCDFVPYICLA 179
>Os06g0143900 Similar to Coatomer protein complex, beta prime
Length = 907
Score = 341 bits (874), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 157/169 (92%), Positives = 165/169 (97%)
Query: 1 MPLRLDIKRKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 60
MPLRL+IKRK AQRSER KSVDLHPTEPWILSSLYSGSVCIW+YQ+QTMVKSFEV+ELPV
Sbjct: 1 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILSSLYSGSVCIWDYQSQTMVKSFEVSELPV 60
Query: 61 RSSKFITRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDD 120
RS+KFI+RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT P+VLSSSDD
Sbjct: 61 RSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
Query: 121 MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKV 169
MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT K+
Sbjct: 121 MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTTKI 169
>AK110120
Length = 830
Score = 258 bits (659), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 113/169 (66%), Positives = 136/169 (80%)
Query: 1 MPLRLDIKRKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 60
MP+ LDI+RKL +SER KS+D HPTEPW+L+ LYSGSV IWNY+T +VK+FEVT +PV
Sbjct: 1 MPMLLDIQRKLFAKSERVKSLDFHPTEPWLLAGLYSGSVNIWNYETGAIVKTFEVTNVPV 60
Query: 61 RSSKFITRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDD 120
R KFI RK W VAG+DD +R +NYNT +KV FEAH DYIRC+ VHPT P+VL+ SDD
Sbjct: 61 RCVKFIARKNWFVAGSDDFQLRAFNYNTHEKVISFEAHPDYIRCLTVHPTGPYVLTGSDD 120
Query: 121 MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKV 169
M IK+WDWDKGW FEGH+HY+M + FNPKD+NTFAS+SLDRTVKV
Sbjct: 121 MAIKMWDWDKGWRLMHTFEGHTHYIMNLCFNPKDSNTFASSSLDRTVKV 169
>AK110077
Length = 1242
Score = 136 bits (343), Expect = 8e-33, Method: Composition-based stats.
Identities = 66/162 (40%), Positives = 96/162 (59%), Gaps = 2/162 (1%)
Query: 10 KLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSSKFITRK 69
K +S R K + HP P + SSL++GS+ +WNYQT T+ E + PVR F +
Sbjct: 6 KFESKSNRVKGIAFHPRLPLLASSLHNGSIQLWNYQTGTIYDRLEEHDGPVRGICFHPSQ 65
Query: 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDWD 129
+V+G DD I+V+N+ T + H DY+R V H P++LS+SDD I++W+W
Sbjct: 66 PLLVSGGDDYKIKVWNHKTRKCLFTLNGHLDYVRTVFFHHEHPWILSASDDQTIRIWNW- 124
Query: 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVCD 171
+ C I GH+HYVM F+PKD + SAS+D+TV+V D
Sbjct: 125 QSRTCIAILTGHNHYVMCAQFHPKD-DLIVSASMDQTVRVWD 165
>Os09g0127800 Similar to Coatomer alpha subunit
Length = 1218
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
Query: 10 KLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSSKFITRK 69
K +S R K + HP PWIL+SL+SG + +W+Y+ T++ F+ + PVR F +
Sbjct: 4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQ 63
Query: 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDWD 129
V+G DD I+V+NY T + H DYIR V H P+++S+SDD I++W+W
Sbjct: 64 PLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW- 122
Query: 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVCDF 172
+ C + GH+HYVM +F+PK+ + SASLD+TV+V D
Sbjct: 123 QSRTCVAVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDI 164
>Os03g0711400 Similar to Coatomer alpha subunit
Length = 1218
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
Query: 10 KLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSSKFITRK 69
K +S R K + HP PWIL+SL+SG + +W+Y+ T++ F+ + PVR F +
Sbjct: 4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQ 63
Query: 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDWD 129
V+G DD I+V+NY T + H DYIR V H P+++S+SDD I++W+W
Sbjct: 64 PLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW- 122
Query: 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVCDF 172
+ C + GH+HYVM +F+PK+ + SASLD+TV+V D
Sbjct: 123 QSRTCVAVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDI 164
>Os01g0780400 WD40-like domain containing protein
Length = 838
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 3/169 (1%)
Query: 9 RKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSSKFITR 68
R L SV+ HP + S + IW+ + + + +++ +R+ +F
Sbjct: 96 RSLTGHRSSCTSVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPD 155
Query: 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDW 128
+WVV G +D ++V++ + F+ H+ IRC+ HP + + + S D +K WD
Sbjct: 156 GRWVVTGGEDNIVKVWDLTAGKLLHDFKFHSGQIRCIDFHPQEFLLATGSADRTVKFWDL 215
Query: 129 DKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVCDFVPYIC 177
+ + + V F+P F LD+++KV + P C
Sbjct: 216 ETFELIGSAGP-EATGVRSTVFHPDGKTLF--CGLDQSLKVFSWEPVRC 261
>Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
(WD-repeat protein BIG-3)
Length = 324
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 8/167 (4%)
Query: 9 RKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELP-VRSSKFIT 67
R L SE SVD + I+S Y G IW+ T +K+ E P V +KF
Sbjct: 149 RVLPAHSEPVTSVDFNRDGAMIVSGSYDGLCRIWDSATGHCIKTLIDDESPPVSFAKFSP 208
Query: 68 RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVH---PTQPFVLSSSDDMLIK 124
++V+A D +R++N++ +K + H + C+ +++S S+D +
Sbjct: 209 NGKFVLAATLDSKLRLWNFSAGKFLKTYTGHVNTKYCIPAAFSITNGKYIVSGSEDKCVY 268
Query: 125 LWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL--DRTVKV 169
+WD + Q EGH+ V+ V+ +P + N AS L D+TVKV
Sbjct: 269 IWDL-QSRKILQKLEGHTDTVIAVSCHPNE-NMIASGGLDGDKTVKV 313
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.134 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,849,164
Number of extensions: 209986
Number of successful extensions: 1082
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1063
Number of HSP's successfully gapped: 10
Length of query: 179
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 85
Effective length of database: 12,127,685
Effective search space: 1030853225
Effective search space used: 1030853225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)