Os02g0209000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os02g0209000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.26 | 0.25 | 10.6 | -0.243 | 0.0173 | 0.611 | 0.238 | -0.409 | 0.118 | 14.7 | 19.1 | 2697 | -- | -- |
| 28.48 | 0.249 | 10.6 | -0.18 | 0.017 | 0.7 | 0.283 | -- | 0.135 | 14.5 | 18.91 | 2705 | -- | -- |
| 28.4 | 0.248 | 10.6 | -0.259 | 0.0295 | 0.608 | -- | -0.481 | 0.117 | 15.7 | 19.19 | 2598 | -- | -- |
| 28.67 | 0.249 | 10.6 | -0.2 | 0.0336 | 0.726 | -- | -- | 0.12 | 17.4 | 18.92 | 2692 | -- | -- |
| 28.44 | 0.248 | 10.6 | -0.24 | -- | 0.59 | -- | -0.47 | 0.12 | -- | 19.18 | 2587 | -- | -- |
| 36.52 | 0.283 | 10.6 | 0.148 | 0.0159 | -- | -0.328 | -- | 0.273 | 2.53 | -- | -- | -- | -- |
| 36.85 | 0.284 | 10.6 | 0.157 | 0.0343 | -- | -- | -- | 0.275 | 21.9 | -- | -- | -- | -- |
| 28.73 | 0.25 | 10.6 | -0.191 | -- | 0.717 | -- | -- | 0.13 | -- | 18.98 | 2692 | -- | -- |
| 29.33 | 0.252 | 10.6 | -- | 0.0339 | 0.605 | -- | -- | 0.172 | 17.7 | 18.99 | 2598 | -- | -- |
| 36.92 | 0.284 | 10.6 | 0.157 | -- | -- | -- | -- | 0.275 | -- | -- | -- | -- | -- |
| 37.5 | 0.286 | 10.6 | -- | 0.035 | -- | -- | -- | 0.258 | 22.2 | -- | -- | -- | -- |
| 29.4 | 0.253 | 10.6 | -- | -- | 0.6 | -- | -- | 0.169 | -- | 19 | 2591 | -- | -- |
| 37.57 | 0.286 | 10.6 | -- | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.68 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 2 | 28.18 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 3 | 28.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 4 | 28.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 5 | 28.29 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 6 | 28.29 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 10 | 28.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 13 | 28.31 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 22 | 28.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 26 | 28.37 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 29 | 28.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 62 | 28.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 66 | 28.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 77 | 28.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 20 |
| 78 | 28.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 103 | 28.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 107 | 28.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 17 |
| 129 | 28.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 190 | 28.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 198 | 28.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 199 | 28.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 226 | 28.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 228 | 28.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 237 | 28.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 239 | 28.79 | temperature | 10 | 1440 | > th | dose dependent | sin | 7 | NA |
| 240 | 28.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 260 | 28.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 281 | 28.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 308 | 28.82 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 389 | 28.85 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 395 | 28.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 409 | 28.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 431 | 28.86 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 464 | 28.87 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 625 | 28.91 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 759 | 28.96 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 773 | 28.96 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 802 | 28.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 846 | 28.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 850 | 28.98 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 906 | 28.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 907 | 28.99 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 928 | 28.99 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 937 | 28.99 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 943 | 28.99 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 957 | 28.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 18 |