BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0138900 Os02g0138900|J023136A12
(129 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0138900 Sodium/calcium exchanger membrane region domai... 227 2e-60
Os03g0397400 Similar to Low affinity calcium transporter CA... 107 2e-24
Os04g0653200 Similar to Low affinity calcium transporter CA... 105 7e-24
Os01g0557500 Cation/proton exchanger 1a 86 5e-18
Os05g0594200 Similar to Cation/proton exchanger 1a 85 1e-17
AK072134 84 2e-17
Os02g0314100 Calcium/proton exchanger family protein 63 6e-11
>Os02g0138900 Sodium/calcium exchanger membrane region domain containing protein
Length = 129
Score = 227 bits (579), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/129 (88%), Positives = 114/129 (88%)
Query: 1 MLSFATLCSCIDITDLSLFKGWVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSA 60
MLSFATLCSCIDITDLSLFKGWVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSA
Sbjct: 1 MLSFATLCSCIDITDLSLFKGWVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSA 60
Query: 61 FGNATELIISIHALSRGKLHVVQQCXXXXXXXXXXXXXXXAFFSGGLACGKTMQTFSKVT 120
FGNATELIISIHALSRGKLHVVQQC AFFSGGLACGKTMQTFSKVT
Sbjct: 61 FGNATELIISIHALSRGKLHVVQQCLLGSILSNLLLVLGSAFFSGGLACGKTMQTFSKVT 120
Query: 121 ILHYFYKIS 129
ILHYFYKIS
Sbjct: 121 ILHYFYKIS 129
>Os03g0397400 Similar to Low affinity calcium transporter CAX2 (Fragment)
Length = 437
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 67/101 (66%)
Query: 20 KGWVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSAFGNATELIISIHALSRGKL 79
+GWVF S++GI PLAERLG+ATEQLAL+TGP +G LLN+ FGNATE+IIS++AL G +
Sbjct: 94 QGWVFLFSLIGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMI 153
Query: 80 HVVQQCXXXXXXXXXXXXXXXAFFSGGLACGKTMQTFSKVT 120
VVQQ AFF+GGL Q F+K +
Sbjct: 154 RVVQQSLLGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKAS 194
>Os04g0653200 Similar to Low affinity calcium transporter CAX2 (Fragment)
Length = 417
Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 65/100 (65%)
Query: 21 GWVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSAFGNATELIISIHALSRGKLH 80
G VF SMLGI PLAERLG+ATEQLA++TGP VG LLN+ FGNATE+II+I+AL G +
Sbjct: 74 GLVFLFSMLGITPLAERLGYATEQLAIYTGPTVGGLLNATFGNATEMIIAIYALKNGMIR 133
Query: 81 VVQQCXXXXXXXXXXXXXXXAFFSGGLACGKTMQTFSKVT 120
VVQQ AFF+GG+ Q FSK T
Sbjct: 134 VVQQSLLGSILSNMLLVMGCAFFAGGIVHRNKDQVFSKAT 173
>Os01g0557500 Cation/proton exchanger 1a
Length = 451
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 52/62 (83%)
Query: 22 WVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSAFGNATELIISIHALSRGKLHV 81
WVF LS+LG+IPLAER+ F TEQ+AL+TGP VG LLN+ GNATELII++ AL +GK+ V
Sbjct: 88 WVFALSLLGLIPLAERVSFLTEQIALYTGPTVGGLLNATCGNATELIIALFALLKGKIEV 147
Query: 82 VQ 83
V+
Sbjct: 148 VK 149
>Os05g0594200 Similar to Cation/proton exchanger 1a
Length = 453
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%)
Query: 22 WVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSAFGNATELIISIHALSRGKLHV 81
WVF LS++G++PLAERL F TEQ+A +TGP VG LLN+ FGN TE+II++ AL GK+ V
Sbjct: 96 WVFVLSLIGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEV 155
Query: 82 VQQCXXXXXXXXXXXXXXXAFFSGGLACGKTMQTFS 117
V+ + F G+A + Q +
Sbjct: 156 VKCSLLGSILSNLLLVLGTSLFLAGIANLRAHQPYD 191
>AK072134
Length = 183
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 62/108 (57%)
Query: 10 CIDITDLSLFKGWVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSAFGNATELII 69
I T L + WVF LS++G++PLAERL F TEQ+A +TGP VG LLN+ FGN TE+II
Sbjct: 33 AIAATYLHFGQVWVFVLSLIGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVII 92
Query: 70 SIHALSRGKLHVVQQCXXXXXXXXXXXXXXXAFFSGGLACGKTMQTFS 117
++ AL GK+ VV+ + F G+A + Q +
Sbjct: 93 ALLALREGKIEVVKCSLLGSILSNLLLVLGTSLFLAGIANLRAHQPYD 140
>Os02g0314100 Calcium/proton exchanger family protein
Length = 450
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 4 FATLCSCIDITDLSLFKGWVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSAFGN 63
F+ + + L L + WVF S++G+ PLAER+ F +E +A GP G ++N+ GN
Sbjct: 85 FSAVPLAVAAESLRLGRVWVFAFSLIGLAPLAERVSFLSEHIANTVGPTAGGIMNATCGN 144
Query: 64 ATELIISIHALSRGKLHVVQ 83
ELII++ AL + K+ +++
Sbjct: 145 VPELIIALFALHKNKMEILK 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.141 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,360,238
Number of extensions: 92272
Number of successful extensions: 210
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 7
Length of query: 129
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 40
Effective length of database: 12,388,755
Effective search space: 495550200
Effective search space used: 495550200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 150 (62.4 bits)