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Os02g0314100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Calcium/proton exchanger family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.24 (0.0353) R2 : 0.702
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.84 (0.093) R2dC : 0.27 R2C : 0.363
β3 : -1.43 (0.0704) R2dE : 0.281 R2E : 0.386
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.625 (0.0743) R2dN8 : 0.0599 R2N8 : 0.0388
σ : 0.663
deviance : 202.56
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_____
C
peak time of C : 7.55
E
wheather : radiation
threshold : 6.652
memory length : 126
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
202.34 0.668 8.24 0.0892 1.84 -1.42 -0.127 0.113 -0.615 7.58 6.89 126 -- --
202.37 0.663 8.24 0.0788 1.84 -1.43 -0.181 -- -0.612 7.54 6.8 126 -- --
202.28 0.662 8.24 0.091 1.84 -1.44 -- 0.16 -0.613 7.52 6.66 126 -- --
202.4 0.663 8.24 0.0774 1.84 -1.43 -- -- -0.617 7.55 6.654 126 -- --
335.69 0.858 8.26 0.17 -- -1.7 -- 0.412 -0.513 -- 6.57 60 -- --
239.62 0.726 8.21 0.0611 2.62 -- -0.172 -- -0.582 9.96 -- -- -- --
239.74 0.725 8.21 0.0545 2.62 -- -- -- -0.582 9.96 -- -- -- --
313.1 0.824 8.26 0.325 -- -1.84 -- -- -0.682 -- 4.859 16 -- --
202.56 0.663 8.24 -- 1.84 -1.43 -- -- -0.625 7.55 6.652 126 -- --
651.21 1.19 8.28 0.0235 -- -- -- -- -0.583 -- -- -- -- --
239.82 0.724 8.21 -- 2.62 -- -- -- -0.588 9.96 -- -- -- --
311.18 0.822 8.31 -- -- -1.79 -- -- -0.715 -- 4.834 13 -- --
651.23 1.19 8.28 -- -- -- -- -- -0.586 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.66 radiation 10.0 30 < th dose dependent rect. 5 15
3 190.37 radiation 10.0 90 < th dose dependent rect. 3 17
7 191.16 radiation 1.0 30 < th dose independent rect. 5 15
8 191.66 radiation 10.0 90 < th dose dependent sin 0 NA
9 192.28 radiation 10.0 90 < th dose dependent rect. 11 9
12 192.79 radiation 10.0 90 < th dose dependent rect. 7 13
16 193.51 radiation 10.0 10 < th dose dependent rect. 7 13
20 193.93 humidity 90.0 90 < th dose independent rect. 20 21
26 194.32 radiation 10.0 90 < th dose independent rect. 2 18
31 194.81 radiation 10.0 10 < th dose dependent rect. 10 10
59 196.07 radiation 10.0 90 < th dose independent rect. 11 9
61 196.12 radiation 10.0 90 < th dose dependent rect. 23 21
64 196.30 precipitation 0.1 270 > th dose independent rect. 2 2
69 196.50 precipitation 0.1 270 > th dose dependent rect. 2 2
95 197.95 temperature 20.0 90 > th dose independent rect. 1 19
128 198.77 radiation 40.0 14400 < th dose dependent rect. 21 8
136 198.99 temperature 20.0 270 > th dose independent rect. 23 21
143 199.10 humidity 50.0 30 > th dose dependent rect. 2 18
159 199.64 radiation 10.0 4320 < th dose dependent rect. 21 8
162 199.69 radiation 10.0 90 < th dose independent rect. 7 13
170 200.03 radiation 10.0 90 < th dose independent rect. 23 21
171 200.07 radiation 1.0 270 > th dose independent rect. 4 11
184 200.13 temperature 20.0 270 > th dose independent rect. 14 16
212 200.65 humidity 70.0 270 > th dose dependent rect. 23 9
213 200.66 radiation 1.0 90 < th dose independent sin 0 NA
223 200.80 radiation 1.0 90 > th dose independent sin 0 NA
252 201.28 radiation 1.0 14400 < th dose dependent rect. 19 2
258 201.43 temperature 20.0 270 > th dose independent rect. 23 9
269 201.52 radiation 20.0 90 < th dose dependent rect. 12 21
270 201.52 radiation 10.0 90 < th dose dependent rect. 21 23
286 201.73 wind 1.0 90 > th dose independent rect. 20 7
343 202.33 atmosphere 1000.0 90 > th dose independent rect. 2 18
346 202.37 humidity 90.0 30 < th dose independent rect. 1 15
428 203.31 wind 7.0 90 < th dose independent rect. 20 7
442 203.41 wind 1.0 10 > th dose independent rect. 20 8
449 203.46 precipitation 0.1 90 < th dose independent rect. 20 7
452 203.46 precipitation 0.1 90 < th dose dependent rect. 20 7
469 203.64 temperature 10.0 90 > th dose independent rect. 20 7
470 203.64 temperature 30.0 90 < th dose independent rect. 20 7
471 203.64 humidity 50.0 90 > th dose independent rect. 20 7
474 203.64 atmosphere 995.0 90 > th dose independent rect. 20 7
475 203.64 radiation 1.0 90 < th dose independent rect. 20 7
480 203.64 temperature 10.0 90 > th dose independent rect. 3 17
482 203.64 atmosphere 1015.0 90 < th dose independent rect. 3 17
485 203.64 radiation 1.0 90 < th dose dependent rect. 20 7
548 203.93 temperature 20.0 1440 > th dose independent rect. 3 1
550 203.95 temperature 20.0 1440 > th dose independent rect. 1 7
553 203.97 temperature 20.0 1440 < th dose independent rect. 2 5
569 204.08 wind 9.0 90 < th dose independent rect. 3 17
570 204.08 precipitation 0.1 270 < th dose independent rect. 17 23
573 204.08 precipitation 0.1 270 < th dose dependent rect. 17 23
592 204.14 temperature 20.0 1440 < th dose independent rect. 3 1
612 204.28 humidity 50.0 90 > th dose independent rect. 2 18
623 204.36 atmosphere 1015.0 90 < th dose independent rect. 20 6
646 204.48 temperature 10.0 1440 > th dose independent rect. 21 6
649 204.48 temperature 30.0 1440 < th dose independent rect. 21 6
653 204.48 humidity 50.0 1440 > th dose independent rect. 21 6
659 204.48 atmosphere 995.0 1440 > th dose independent rect. 21 6
660 204.48 radiation 1.0 1440 < th dose independent rect. 21 6
681 204.48 temperature 10.0 1440 > th dose independent rect. 3 18
693 204.49 wind 1.0 90 > th dose independent rect. 20 21
697 204.51 humidity 80.0 30 > th dose dependent sin 3 NA
706 204.57 temperature 20.0 90 > th dose independent rect. 16 4
710 204.58 atmosphere 995.0 43200 < th dose independent rect. 13 9
718 204.60 atmosphere 995.0 43200 < th dose independent rect. 14 4
747 204.65 humidity 90.0 43200 < th dose independent rect. 13 1
750 204.67 temperature 20.0 1440 > th dose independent rect. 5 2
758 204.72 atmosphere 995.0 43200 > th dose independent rect. 13 8
773 204.79 atmosphere 995.0 43200 > th dose independent rect. 14 3
781 204.81 radiation 30.0 90 < th dose dependent rect. 15 18
801 204.93 atmosphere 995.0 43200 < th dose dependent rect. 15 2
816 205.02 temperature 20.0 10 > th dose independent rect. 16 15
842 205.05 precipitation 0.1 270 < th dose independent rect. 18 21
843 205.05 precipitation 0.1 270 < th dose dependent rect. 18 21
845 205.06 radiation 40.0 270 < th dose independent rect. 15 15
850 205.07 radiation 10.0 90 < th dose dependent no NA NA
864 205.13 precipitation 0.1 90 < th dose independent rect. 20 21
865 205.13 precipitation 0.1 90 < th dose dependent rect. 20 21
866 205.14 atmosphere 995.0 43200 > th dose independent rect. 15 1
876 205.18 precipitation 0.1 270 < th dose independent rect. 6 9
878 205.18 precipitation 0.1 270 < th dose dependent rect. 6 9
888 205.23 atmosphere 995.0 43200 < th dose independent rect. 15 1
907 205.32 precipitation 0.1 90 < th dose independent rect. 2 18
909 205.32 precipitation 0.1 90 < th dose dependent rect. 2 18
930 205.40 humidity 80.0 90 > th dose dependent rect. 1 14
940 205.45 temperature 20.0 30 > th dose independent rect. 16 17
955 205.48 humidity 80.0 90 > th dose dependent rect. 1 16
968 205.52 temperature 10.0 270 > th dose independent rect. 6 9
969 205.52 atmosphere 1015.0 270 < th dose independent rect. 6 9
971 205.52 temperature 10.0 270 > th dose independent rect. 15 15