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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0138900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sodium/calcium exchanger membrane region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.83 (0.0358) R2 : 0.419
β1 : -1.08 (0.138) R2dD : 0.0928 R2D : 0.146
β2 : 0.728 (0.0918) R2dC : 0.0802 R2C : 0.0819
β3 : 0.902 (0.133) R2dE : 0.065 R2E : 0.124
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.537 (0.0762) R2dN8 : 0.084 R2N8 : 0.108
σ : 0.667
deviance : 205.36
__
_____
C
peak time of C : 8.04
E
wheather : wind
threshold : 8.2
memory length : 4396
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
203.22 0.67 3.89 -0.98 0.714 1.32 -0.395 2.66 0.481 7.98 8.846 4398 -- --
205.13 0.667 3.82 -1.1 0.758 0.905 -0.228 -- 0.528 8 8.3 4396 -- --
203.68 0.665 3.89 -0.989 0.713 1.33 -- 2.67 0.481 8 8.845 4398 -- --
205.36 0.667 3.83 -1.08 0.728 0.902 -- -- 0.537 8.04 8.2 4396 -- --
230.35 0.707 3.91 -0.941 -- 1.5 -- 2.95 0.5 -- 8.484 4316 -- --
223.97 0.702 3.82 -1.39 0.808 -- -0.446 -- 0.549 8.4 -- -- -- --
224.59 0.702 3.82 -1.4 0.808 -- -- -- 0.55 8.44 -- -- -- --
233.02 0.711 3.84 -1.09 -- 1.01 -- -- 0.54 -- 8.3 4391 -- --
233.37 0.711 3.82 -- 0.711 1.26 -- -- 0.652 7.9 8.1 4391 -- --
261.03 0.755 3.84 -1.39 -- -- -- -- 0.558 -- -- -- -- --
276.14 0.777 3.79 -- 0.803 -- -- -- 0.705 8.57 -- -- -- --
258.21 0.748 3.82 -- -- 1.36 -- -- 0.654 -- 8.1 4391 -- --
312.32 0.825 3.81 -- -- -- -- -- 0.712 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 201.45 wind 9 4320 < th dose independent sin 6 NA
2 201.53 wind 9 4320 > th dose dependent sin 6 NA
3 201.66 wind 9 4320 > th dose independent sin 6 NA
7 202.11 wind 9 4320 > th dose independent rect. 18 23
11 202.19 wind 9 4320 < th dose independent rect. 18 23
12 202.20 wind 9 4320 > th dose independent rect. 18 20
14 202.26 wind 9 4320 > th dose independent rect. 20 21
29 202.62 wind 9 4320 < th dose independent rect. 2 15
37 202.88 wind 7 4320 > th dose dependent rect. 2 15
46 202.95 wind 7 4320 > th dose dependent rect. 2 18
48 202.98 wind 7 4320 > th dose dependent rect. 18 20
52 203.00 wind 7 4320 > th dose dependent rect. 15 1
55 203.02 wind 7 4320 > th dose dependent rect. 23 18
61 203.06 wind 9 4320 < th dose independent rect. 3 17
66 203.08 wind 9 4320 > th dose dependent rect. 18 23
71 203.11 wind 7 4320 > th dose dependent rect. 23 21
97 203.23 wind 9 4320 > th dose independent rect. 3 14
101 203.23 wind 9 4320 > th dose dependent rect. 20 21
103 203.24 wind 9 4320 > th dose independent rect. 23 18
108 203.25 wind 9 4320 > th dose independent rect. 15 23
122 203.35 wind 9 4320 > th dose independent rect. 15 1
124 203.35 wind 9 4320 > th dose independent rect. 13 23
131 203.37 wind 7 4320 > th dose dependent rect. 15 23
141 203.42 wind 9 4320 < th dose independent rect. 13 22
146 203.44 wind 9 4320 < th dose independent rect. 15 23
151 203.46 wind 9 4320 > th dose independent rect. 3 18
157 203.48 wind 9 4320 > th dose independent rect. 23 22
210 203.59 wind 9 4320 > th dose independent rect. 10 22
226 203.62 wind 9 4320 > th dose independent no NA NA
236 203.64 wind 9 4320 < th dose independent rect. 9 23
237 203.64 wind 7 4320 > th dose dependent rect. 12 20
248 203.68 wind 9 4320 < th dose independent no NA NA
249 203.68 wind 9 4320 < th dose independent rect. 13 19
252 203.70 wind 9 4320 > th dose independent rect. 13 19
313 203.82 wind 9 4320 > th dose independent rect. 7 23
350 203.92 wind 9 4320 < th dose independent rect. 15 1
368 203.97 wind 7 4320 > th dose dependent no NA NA
504 204.60 wind 7 4320 > th dose dependent rect. 12 8
572 204.93 wind 7 4320 > th dose dependent rect. 12 5
631 205.11 wind 7 4320 > th dose dependent rect. 12 12
662 205.21 wind 9 4320 < th dose independent rect. 13 7
667 205.22 wind 9 4320 < th dose independent rect. 13 4
729 205.32 wind 9 4320 > th dose independent rect. 13 8
784 205.41 wind 9 4320 > th dose independent rect. 13 6
811 205.43 wind 9 4320 > th dose independent rect. 13 11
849 205.47 wind 9 4320 > th dose independent rect. 10 11
855 205.48 wind 9 4320 < th dose independent rect. 10 11
877 205.50 wind 7 4320 > th dose dependent rect. 15 4
915 205.55 wind 9 4320 < th dose independent rect. 9 8
955 205.59 wind 9 4320 > th dose independent rect. 10 14