BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0138900 Os02g0138900|J023136A12
(129 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13320.1 | chr3:4315418-4317997 FORWARD LENGTH=442 101 1e-22
AT1G55730.1 | chr1:20831387-20833941 REVERSE LENGTH=442 99 5e-22
AT1G55720.1 | chr1:20828118-20830595 REVERSE LENGTH=468 92 9e-20
AT2G38170.3 | chr2:15990113-15993178 REVERSE LENGTH=476 85 9e-18
AT5G01490.1 | chr5:195589-198465 FORWARD LENGTH=455 81 2e-16
AT3G51860.1 | chr3:19239458-19242519 FORWARD LENGTH=460 81 2e-16
>AT3G13320.1 | chr3:4315418-4317997 FORWARD LENGTH=442
Length = 441
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 62/99 (62%)
Query: 20 KGWVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSAFGNATELIISIHALSRGKL 79
KGWVF L+++GI PLAERLG+ATEQLA +TGP VG LLN+ FGN TELIISI AL G +
Sbjct: 97 KGWVFLLTLVGITPLAERLGYATEQLACYTGPTVGGLLNATFGNVTELIISIFALKNGMI 156
Query: 80 HVVQQCXXXXXXXXXXXXXXXAFFSGGLACGKTMQTFSK 118
VVQ AFF GGL + Q F K
Sbjct: 157 RVVQLTLLGSILSNMLLVLGCAFFCGGLVFYQKDQVFDK 195
>AT1G55730.1 | chr1:20831387-20833941 REVERSE LENGTH=442
Length = 441
Score = 99.0 bits (245), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 61/99 (61%)
Query: 20 KGWVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSAFGNATELIISIHALSRGKL 79
KGW+F LS++GI PLAERLG+ATEQLA +TG VG LLN+ FGN TELIISI AL G +
Sbjct: 97 KGWIFLLSLVGITPLAERLGYATEQLACYTGSTVGGLLNATFGNVTELIISIFALKSGMI 156
Query: 80 HVVQQCXXXXXXXXXXXXXXXAFFSGGLACGKTMQTFSK 118
VVQ AFF GGL + Q F K
Sbjct: 157 RVVQLTLLGSILSNMLLVLGCAFFCGGLVFSQKEQVFDK 195
>AT1G55720.1 | chr1:20828118-20830595 REVERSE LENGTH=468
Length = 467
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 58/99 (58%)
Query: 20 KGWVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSAFGNATELIISIHALSRGKL 79
KGW F LS++GI PLAERLG+ATEQL+ +TG VG LLN+ FGN ELIISI AL G +
Sbjct: 108 KGWFFLLSLVGITPLAERLGYATEQLSCYTGATVGGLLNATFGNVIELIISIIALKNGMI 167
Query: 80 HVVQQCXXXXXXXXXXXXXXXAFFSGGLACGKTMQTFSK 118
VVQ AFF GGL Q F K
Sbjct: 168 RVVQLTLLGSILSNILLVLGCAFFCGGLVFPGKDQVFDK 206
>AT2G38170.3 | chr2:15990113-15993178 REVERSE LENGTH=476
Length = 475
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 59/97 (60%)
Query: 22 WVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSAFGNATELIISIHALSRGKLHV 81
W+F LS+LG+ PLAER+ F TEQLA +TGP +G LLN+ GNATELII+I AL+ K+ V
Sbjct: 97 WIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAV 156
Query: 82 VQQCXXXXXXXXXXXXXXXAFFSGGLACGKTMQTFSK 118
V+ + F GG+A + Q F +
Sbjct: 157 VKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDR 193
>AT5G01490.1 | chr5:195589-198465 FORWARD LENGTH=455
Length = 454
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 59/98 (60%)
Query: 20 KGWVFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSAFGNATELIISIHALSRGKL 79
+ WVF LS+LG+ PLAER+ F TEQ+A TGP VG L+N+ GNATE+II+I A+ + K+
Sbjct: 96 RAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKM 155
Query: 80 HVVQQCXXXXXXXXXXXXXXXAFFSGGLACGKTMQTFS 117
+V+ + F GG++ + Q+F
Sbjct: 156 RIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFD 193
>AT3G51860.1 | chr3:19239458-19242519 FORWARD LENGTH=460
Length = 459
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 58/96 (60%)
Query: 23 VFPLSMLGIIPLAERLGFATEQLALFTGPKVGRLLNSAFGNATELIISIHALSRGKLHVV 82
+F LS++G+ PLAER+ F TEQLA +TGP VG LLN+ GNATELII+I AL+ K+ VV
Sbjct: 98 IFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALANNKVAVV 157
Query: 83 QQCXXXXXXXXXXXXXXXAFFSGGLACGKTMQTFSK 118
+ + F GG+A + Q F +
Sbjct: 158 KYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDR 193
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.141 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,237,559
Number of extensions: 64244
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 6
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 106 (45.4 bits)