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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0594200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cation/proton exchanger 1a.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.42 (0.0551) R2 : 0.774
β1 : 1.09 (0.217) R2dD : 0.0143 R2D : 0.0352
β2 : 4.44 (0.135) R2dC : 0.548 R2C : 0.531
β3 : 3.21 (0.213) R2dE : 0.13 R2E : 0.193
β4 : 2.99 (0.564) R2dD*C : 0.0148 R2D*C : 0.0109
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.757 (0.125) R2dN8 : 0.0267 R2N8 : 0.0432
σ : 1.01
deviance : 467.94
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_____
C
peak time of C : 20.5
E
wheather : temperature
threshold : 20.69
memory length : 1470
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
462.03 1.01 6.35 1.44 4.47 3.32 3.02 1.98 0.858 20.5 20.4 1457 -- --
467.94 1.01 6.42 1.09 4.44 3.21 2.99 -- 0.757 20.5 20.69 1470 -- --
489.63 1.03 6.35 1.35 4.47 3.33 -- 1.98 0.848 20.5 20.53 1453 -- --
496.83 1.04 6.41 0.986 4.48 3.07 -- -- 0.766 20.5 20.59 1473 -- --
1372.43 1.73 6.3 1.76 -- 3.25 -- 2.19 0.573 -- 21.8 763 -- --
667.01 1.21 6.26 2.37 4.47 -- 3.36 -- 1.46 20.6 -- -- -- --
703.64 1.24 6.26 2.26 4.47 -- -- -- 1.46 20.6 -- -- -- --
1133.6 1.57 6.46 1.09 -- 3.86 -- -- 0.0096 -- 25.15 717 -- --
518.22 1.06 6.45 -- 4.48 3.42 -- -- 0.572 20.5 20.58 1473 -- --
1825.13 2 6.14 2.24 -- -- -- -- 1.42 -- -- -- -- --
838.16 1.35 6.31 -- 4.46 -- -- -- 1.21 20.6 -- -- -- --
1143.57 1.58 6.49 -- -- 3.96 -- -- -0.17 -- 25.1 641 -- --
1958 2.07 6.19 -- -- -- -- -- 1.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 459.33 temperature 20 1440 > th dose independent rect. 5 2
2 460.98 temperature 20 1440 > th dose independent sin 8 NA
4 461.41 temperature 30 1440 < th dose dependent rect. 1 2
5 461.46 temperature 20 1440 > th dose independent rect. 20 11
7 461.56 temperature 30 1440 < th dose dependent rect. 24 5
11 461.64 temperature 10 1440 > th dose dependent rect. 2 1
15 461.68 temperature 20 1440 < th dose independent rect. 21 10
19 461.74 temperature 15 1440 > th dose dependent rect. 24 5
26 461.92 temperature 20 1440 < th dose independent sin 8 NA
28 461.93 temperature 20 1440 > th dose independent rect. 23 10
29 461.94 temperature 20 1440 < th dose independent rect. 1 6
33 461.98 temperature 20 1440 > th dose independent rect. 2 6
56 462.44 temperature 20 1440 > th dose independent rect. 17 14
70 462.64 temperature 20 1440 < th dose independent rect. 23 9
154 464.05 temperature 20 1440 < th dose independent rect. 5 2
163 464.14 temperature 25 1440 < th dose dependent rect. 21 14
166 464.17 temperature 25 1440 < th dose dependent rect. 23 12
208 464.89 temperature 25 1440 < th dose dependent sin 9 NA
640 470.32 temperature 20 1440 > th dose independent rect. 3 1
673 470.72 temperature 20 1440 < th dose independent rect. 3 1
682 470.80 temperature 20 1440 > th dose independent no NA NA
688 470.91 temperature 25 1440 < th dose dependent rect. 8 22
732 471.49 temperature 25 1440 < th dose dependent no NA NA
737 471.62 temperature 25 1440 < th dose dependent rect. 23 23
754 471.88 temperature 20 1440 < th dose independent no NA NA