Os03g0397400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Low affinity calcium transporter CAX2 (Fragment).
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Os03g0397400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Low affinity calcium transporter CAX2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.1 | 0.465 | 6.38 | 1.26 | 0.497 | -0.658 | -0.947 | 1.26 | 0.443 | 3.49 | 10.68 | 1344 | -- | -- |
| 100.74 | 0.467 | 6.39 | 1.12 | 0.508 | -0.687 | -0.761 | -- | 0.431 | 3.46 | 10.04 | 1348 | -- | -- |
| 100.65 | 0.467 | 6.38 | 1.27 | 0.506 | -0.694 | -- | 1.06 | 0.443 | 3.31 | 10.04 | 1343 | -- | -- |
| 102.59 | 0.472 | 6.4 | 1.15 | 0.507 | -0.682 | -- | -- | 0.422 | 3.26 | 10.03 | 1347 | -- | -- |
| 103.38 | 0.474 | 6.42 | 1.09 | -- | -0.81 | -- | 1.53 | 0.326 | -- | 3.73 | 1803 | -- | -- |
| 111.66 | 0.495 | 6.45 | 0.896 | 0.451 | -- | -0.996 | -- | 0.191 | 4.16 | -- | -- | -- | -- |
| 114.45 | 0.501 | 6.45 | 0.906 | 0.445 | -- | -- | -- | 0.196 | 4.13 | -- | -- | -- | -- |
| 107.55 | 0.483 | 6.42 | 1.06 | -- | -0.765 | -- | -- | 0.318 | -- | 3.73 | 1789 | -- | -- |
| 127.69 | 0.526 | 6.42 | -- | 0.439 | -0.548 | -- | -- | 0.282 | 3.17 | 20 | 1394 | -- | -- |
| 125.18 | 0.523 | 6.45 | 0.924 | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
| 136.11 | 0.546 | 6.47 | -- | 0.462 | -- | -- | -- | 0.0951 | 4.1 | -- | -- | -- | -- |
| 126.3 | 0.523 | 6.42 | -- | -- | -0.939 | -- | -- | 0.213 | -- | 8.21 | 1787 | -- | -- |
| 147.72 | 0.567 | 6.47 | -- | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.43 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 2 | 94.50 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 3 | 94.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 6 | 94.71 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 7 | 94.72 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 17 | 94.79 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 37 | 95.43 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 129 | 96.43 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 130 | 96.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 133 | 96.46 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 145 | 96.51 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 167 | 96.60 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 268 | 97.12 | humidity | 50 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 283 | 97.21 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 22 |
| 287 | 97.24 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 307 | 97.32 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 348 | 97.45 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 361 | 97.58 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 368 | 97.61 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 389 | 97.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 391 | 97.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 418 | 97.77 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 431 | 97.85 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 437 | 97.87 | humidity | 80 | 720 | > th | dose independent | rect. | 4 | 18 |
| 451 | 97.92 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 468 | 97.98 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 488 | 98.03 | radiation | 10 | 1440 | > th | dose independent | sin | 21 | NA |
| 490 | 98.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 535 | 98.15 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 596 | 98.31 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 621 | 98.37 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 11 |
| 639 | 98.39 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 669 | 98.43 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 715 | 98.48 | humidity | 50 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 763 | 98.58 | humidity | 50 | 720 | > th | dose dependent | sin | 15 | NA |
| 773 | 98.61 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 783 | 98.65 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 829 | 98.71 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 834 | 98.72 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 842 | 98.74 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 850 | 98.75 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 946 | 98.77 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 949 | 98.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 961 | 98.79 | radiation | 1 | 720 | < th | dose independent | sin | 17 | NA |
| 962 | 98.79 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 965 | 98.79 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 985 | 98.82 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 10 |