Os01g0557500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cation/proton exchanger 1a.
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Os01g0557500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cation/proton exchanger 1a.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.03 | 0.456 | 12.6 | 0.744 | 3.08 | -2.99 | 0.867 | 2.77 | -0.0789 | 8.08 | 10.77 | 365 | 21.7 | 20.3 |
| 100.7 | 0.467 | 12.6 | 0.357 | 3.2 | -2.87 | 1.21 | -- | -0.181 | 8.16 | 7.369 | 377 | 21.9 | 20 |
| 95.67 | 0.456 | 12.6 | 0.777 | 3.11 | -2.98 | -- | 3.15 | -0.0662 | 8.05 | 9.376 | 366 | 21.6 | 20.5 |
| 105.23 | 0.478 | 12.6 | 0.365 | 3.26 | -2.97 | -- | -- | -0.201 | 8.17 | 6.905 | 387 | 21.7 | 20 |
| 134.01 | 0.539 | 12.6 | 0.912 | -- | -4.48 | -- | 2.01 | -0.00881 | -- | 2.682 | 849 | 2.95 | 15.9 |
| 212.07 | 0.683 | 12.7 | -0.155 | 3.09 | -- | 1.2 | -- | -0.521 | 6.76 | -- | -- | -- | -- |
| 215.66 | 0.688 | 12.7 | -0.136 | 3.1 | -- | -- | -- | -0.525 | 6.73 | -- | -- | -- | -- |
| 122.9 | 0.516 | 12.7 | 0.5 | -- | -4.77 | -- | -- | -0.205 | -- | -6.694 | 937 | 1.8 | 16.2 |
| 108.43 | 0.485 | 12.6 | -- | 3.21 | -2.81 | -- | -- | -0.244 | 8.1 | 6.932 | 372 | 21.7 | 20.3 |
| 717.26 | 1.25 | 12.8 | -0.0653 | -- | -- | -- | -- | -0.464 | -- | -- | -- | -- | -- |
| 216.15 | 0.688 | 12.7 | -- | 3.1 | -- | -- | -- | -0.51 | 6.73 | -- | -- | -- | -- |
| 125.74 | 0.522 | 12.8 | -- | -- | -4.49 | -- | -- | -0.316 | -- | -8.48 | 932 | 2.47 | 15.5 |
| 717.37 | 1.25 | 12.8 | -- | -- | -- | -- | -- | -0.457 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 21 |
| 2 | 101.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 18 |
| 31 | 112.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 69 | 117.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 72 | 117.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 103 | 120.98 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 116 | 121.90 | temperature | 15 | 270 | > th | dose dependent | sin | 21 | NA |
| 150 | 123.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 15 |
| 156 | 124.09 | temperature | 30 | 270 | < th | dose dependent | sin | 20 | NA |
| 182 | 125.30 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 8 |
| 222 | 126.91 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 237 | 127.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 9 |
| 299 | 128.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 301 | 128.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 329 | 128.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 354 | 128.76 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 400 | 129.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 409 | 129.12 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 421 | 129.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 535 | 130.01 | temperature | 15 | 1440 | > th | dose dependent | sin | 8 | NA |
| 601 | 130.43 | temperature | 30 | 1440 | < th | dose dependent | sin | 8 | NA |
| 897 | 132.38 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 16 |
| 954 | 132.80 | temperature | 15 | 720 | > th | dose dependent | sin | 3 | NA |
| 967 | 132.88 | radiation | 1 | 270 | < th | dose independent | rect. | 15 | 9 |