Os04g0653200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Low affinity calcium transporter CAX2 (Fragment).
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Os04g0653200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Low affinity calcium transporter CAX2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.11 | 0.278 | 10.6 | -0.62 | 0.339 | 0.456 | -0.349 | 1.36 | -0.0402 | 5.96 | 29.6 | 34 | -- | -- |
| 37.44 | 0.285 | 10.6 | -0.409 | 0.355 | 0.536 | -0.139 | -- | 0.00405 | 5.92 | 34.96 | 17 | -- | -- |
| 35.39 | 0.277 | 10.6 | -0.614 | 0.342 | 0.435 | -- | 1.29 | -0.0367 | 5.91 | 29.6 | 36 | -- | -- |
| 37.48 | 0.285 | 10.6 | -0.401 | 0.351 | 0.522 | -- | -- | 0.0061 | 5.83 | 45.28 | 15 | -- | -- |
| 40.15 | 0.295 | 10.7 | -0.576 | -- | 0.651 | -- | 1.43 | -0.02 | -- | 30.89 | 107 | -- | -- |
| 39.98 | 0.296 | 10.6 | -0.504 | 0.456 | -- | 0.198 | -- | -0.067 | 4.74 | -- | -- | -- | -- |
| 40.07 | 0.296 | 10.6 | -0.504 | 0.459 | -- | -- | -- | -0.0679 | 4.85 | -- | -- | -- | -- |
| 42.16 | 0.302 | 10.6 | -0.324 | -- | 0.733 | -- | -- | 0.0569 | -- | 31.83 | 175 | -- | -- |
| 41.32 | 0.299 | 10.6 | -- | 0.307 | 0.72 | -- | -- | 0.0734 | 6.34 | 53.46 | 32 | -- | -- |
| 51.18 | 0.334 | 10.6 | -0.487 | -- | -- | -- | -- | -0.0561 | -- | -- | -- | -- | -- |
| 46.78 | 0.32 | 10.6 | -- | 0.45 | -- | -- | -- | -0.0118 | 4.89 | -- | -- | -- | -- |
| 44.79 | 0.312 | 10.6 | -- | -- | 0.817 | -- | -- | 0.111 | -- | 31.5 | 180 | -- | -- |
| 57.45 | 0.354 | 10.6 | -- | -- | -- | -- | -- | -0.00202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.20 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 14 | 33.03 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 32 | 33.26 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 46 | 33.34 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 84 | 33.68 | temperature | 15.0 | 30 | > th | dose dependent | sin | 4 | NA |
| 95 | 33.74 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 4 |
| 108 | 33.79 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 18 |
| 134 | 33.88 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 15 |
| 138 | 33.89 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 143 | 33.91 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 151 | 33.94 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 152 | 33.94 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 155 | 33.95 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 159 | 33.96 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 160 | 33.96 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 162 | 33.97 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 184 | 34.00 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 213 | 34.05 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 222 | 34.06 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 227 | 34.06 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 273 | 34.10 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 15 |
| 325 | 34.15 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 19 |
| 348 | 34.18 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 359 | 34.21 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 471 | 34.37 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 17 |
| 484 | 34.39 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 485 | 34.40 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 11 |
| 522 | 34.47 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 523 | 34.47 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 550 | 34.55 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 12 |
| 573 | 34.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 583 | 34.59 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 605 | 34.62 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 609 | 34.64 | temperature | 25.0 | 30 | > th | dose independent | sin | 2 | NA |
| 610 | 34.64 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 627 | 34.68 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 14 |
| 632 | 34.69 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 644 | 34.70 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 650 | 34.71 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 16 |
| 672 | 34.74 | temperature | 25.0 | 90 | < th | dose independent | sin | 4 | NA |
| 676 | 34.74 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 679 | 34.74 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 11 |
| 685 | 34.75 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 688 | 34.76 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 693 | 34.77 | temperature | 25.0 | 270 | > th | dose independent | rect. | 4 | 7 |
| 698 | 34.78 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 721 | 34.80 | temperature | 30.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 736 | 34.81 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 742 | 34.82 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 757 | 34.85 | wind | 7.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 768 | 34.86 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 771 | 34.86 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 774 | 34.87 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 787 | 34.88 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 796 | 34.88 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 826 | 34.92 | wind | 1.0 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 853 | 34.94 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 15 |
| 854 | 34.94 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 8 | 15 |
| 855 | 34.94 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 6 | 16 |
| 886 | 34.97 | wind | 5.0 | 720 | < th | dose independent | rect. | 6 | 12 |
| 898 | 34.98 | temperature | 20.0 | 720 | > th | dose independent | sin | 22 | NA |
| 911 | 34.99 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 912 | 34.99 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 6 |
| 917 | 34.99 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 931 | 35.01 | temperature | 25.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 945 | 35.02 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 946 | 35.02 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 953 | 35.03 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 985 | 35.04 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 987 | 35.05 | wind | 7.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 989 | 35.05 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 6 |