BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0974700 Os01g0974700|J065170O14
(79 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0974700 Inorganic pyrophosphatase family protein 124 1e-29
Os05g0114000 Similar to PRLI-interacting factor F (Fragment) 78 2e-15
Os04g0687100 Similar to Soluble inorganic pyrophosphatase (... 76 7e-15
Os10g0406100 Similar to PRLI-interacting factor F (Fragment) 75 8e-15
Os02g0704900 Similar to Inorganic pyrophosphatase-like protein 75 1e-14
Os05g0438500 Similar to Soluble inorganic pyrophosphatase (... 75 1e-14
Os01g0866500 Similar to Soluble inorganic pyrophosphatase (... 75 2e-14
>Os01g0974700 Inorganic pyrophosphatase family protein
Length = 79
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 21 TMQHAQVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQVCISLHVAKSEYNKSFI 79
TMQHAQVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQVCISLHVAKSEYNKSFI
Sbjct: 21 TMQHAQVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQVCISLHVAKSEYNKSFI 79
>Os05g0114000 Similar to PRLI-interacting factor F (Fragment)
Length = 216
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/36 (97%), Positives = 36/36 (100%)
Query: 27 VDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQ 62
VDRVLYSSVVYPHNYGFIPRTLC+DSDPLDVLVIMQ
Sbjct: 78 VDRVLYSSVVYPHNYGFIPRTLCEDSDPLDVLVIMQ 113
>Os04g0687100 Similar to Soluble inorganic pyrophosphatase (EC 3.6.1.1)
(Pyrophosphate phospho- hydrolase) (PPase)
Length = 213
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 32/37 (86%), Positives = 37/37 (100%)
Query: 26 QVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQ 62
+VDRVLYSSVVYPHNYGFIPRTLC+D+DP+DVLV+MQ
Sbjct: 74 KVDRVLYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQ 110
>Os10g0406100 Similar to PRLI-interacting factor F (Fragment)
Length = 204
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 32/37 (86%), Positives = 36/37 (97%)
Query: 26 QVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQ 62
+VDRVLYSSVVYPHNYGFIPRTLC+D DP+DVLV+MQ
Sbjct: 65 KVDRVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQ 101
>Os02g0704900 Similar to Inorganic pyrophosphatase-like protein
Length = 214
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/37 (86%), Positives = 36/37 (97%)
Query: 26 QVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQ 62
+VDRVLYSSVVYPHNYGFIPRTLC+D DP+DVLV+MQ
Sbjct: 75 KVDRVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQ 111
>Os05g0438500 Similar to Soluble inorganic pyrophosphatase (EC 3.6.1.1)
(Pyrophosphate phospho- hydrolase) (PPase)
Length = 224
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/37 (83%), Positives = 37/37 (100%)
Query: 26 QVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQ 62
+VDR+LYSSVVYPHNYGFIPRTLC+D+DP+DVLV+MQ
Sbjct: 85 KVDRILYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQ 121
>Os01g0866500 Similar to Soluble inorganic pyrophosphatase (EC 3.6.1.1)
(Pyrophosphate phospho- hydrolase) (PPase)
Length = 212
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 27 VDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQ 62
VDRVLYSSVVYPHNYGFIPRTLC+D+DP+DVLV+MQ
Sbjct: 75 VDRVLYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQ 110
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,900,845
Number of extensions: 50228
Number of successful extensions: 140
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 7
Length of query: 79
Length of database: 17,035,801
Length adjustment: 50
Effective length of query: 29
Effective length of database: 14,425,101
Effective search space: 418327929
Effective search space used: 418327929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)