Os02g0704900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Inorganic pyrophosphatase-like protein.
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Os02g0704900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Inorganic pyrophosphatase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.63 | 0.375 | 14.5 | -0.829 | 0.84 | -0.713 | -0.091 | -0.42 | -0.801 | 22.1 | 20.7 | 849 | -- | -- |
| 64.03 | 0.373 | 14.4 | -0.746 | 0.83 | -0.665 | -0.237 | -- | -0.775 | 22.1 | 20.9 | 906 | -- | -- |
| 63.65 | 0.372 | 14.5 | -0.828 | 0.838 | -0.71 | -- | -0.442 | -0.803 | 22.1 | 20.7 | 849 | -- | -- |
| 64.25 | 0.373 | 14.4 | -0.746 | 0.827 | -0.662 | -- | -- | -0.776 | 22.1 | 20.91 | 903 | -- | -- |
| 99.43 | 0.464 | 14.5 | -0.832 | -- | -0.644 | -- | -0.559 | -0.812 | -- | 21.1 | 1538 | -- | -- |
| 77.24 | 0.412 | 14.5 | -1 | 0.731 | -- | -0.214 | -- | -0.942 | 22 | -- | -- | -- | -- |
| 77.4 | 0.412 | 14.5 | -0.996 | 0.731 | -- | -- | -- | -0.942 | 22.1 | -- | -- | -- | -- |
| 100.08 | 0.466 | 14.4 | -0.721 | -- | -0.619 | -- | -- | -0.781 | -- | 21.1 | 1544 | -- | -- |
| 72.68 | 0.397 | 14.4 | -- | 0.748 | -0.858 | -- | -- | -0.66 | 22.3 | 20.8 | 24031 | -- | -- |
| 109.65 | 0.489 | 14.5 | -0.987 | -- | -- | -- | -- | -0.941 | -- | -- | -- | -- | -- |
| 103.58 | 0.476 | 14.5 | -- | 0.727 | -- | -- | -- | -0.831 | 22 | -- | -- | -- | -- |
| 104.74 | 0.477 | 14.4 | -- | -- | -0.867 | -- | -- | -0.618 | -- | 18.69 | 47520 | -- | -- |
| 135.34 | 0.543 | 14.4 | -- | -- | -- | -- | -- | -0.831 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 5 | 55.09 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 64 | 58.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 68 | 58.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 88 | 58.42 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |
| 99 | 58.58 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 100 | 58.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 139 | 59.16 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 149 | 59.28 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 182 | 59.65 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 193 | 59.73 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 7 |
| 201 | 59.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 206 | 59.81 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 215 | 59.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 245 | 60.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 253 | 60.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 267 | 60.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 325 | 60.53 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 449 | 61.09 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 684 | 62.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 8 |
| 736 | 62.52 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 19 |
| 744 | 62.57 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 17 |
| 815 | 62.82 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 5 |