Os05g0114000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PRLI-interacting factor F (Fragment).
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Os05g0114000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PRLI-interacting factor F (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 285.2 | 0.793 | 11.7 | -3.66 | 1.24 | -1.96 | 0.0675 | 0.351 | -1.18 | 10.6 | 70 | 1242 | -- | -- |
| 285.42 | 0.787 | 11.7 | -3.61 | 1.25 | -1.94 | 0.128 | -- | -1.16 | 10.6 | 70.52 | 1239 | -- | -- |
| 285.2 | 0.787 | 11.7 | -3.66 | 1.25 | -1.96 | -- | 0.369 | -1.18 | 10.6 | 70.04 | 1239 | -- | -- |
| 285.48 | 0.787 | 11.7 | -3.61 | 1.25 | -1.94 | -- | -- | -1.16 | 10.6 | 70.34 | 1239 | -- | -- |
| 347.07 | 0.868 | 11.8 | -3.62 | -- | -1.91 | -- | 0.546 | -1.19 | -- | 71.46 | 1488 | -- | -- |
| 421.43 | 0.962 | 11.7 | -3.19 | 0.931 | -- | 0.295 | -- | -0.898 | 9.38 | -- | -- | -- | -- |
| 421.67 | 0.962 | 11.7 | -3.17 | 0.927 | -- | -- | -- | -0.897 | 9.54 | -- | -- | -- | -- |
| 347.69 | 0.868 | 11.8 | -3.53 | -- | -1.88 | -- | -- | -1.16 | -- | 71.77 | 1488 | -- | -- |
| 608.3 | 1.15 | 11.6 | -- | 1.03 | -1.82 | -- | -- | -0.803 | 10.3 | 75 | 2746 | -- | -- |
| 472.39 | 1.02 | 11.7 | -3.18 | -- | -- | -- | -- | -0.895 | -- | -- | -- | -- | -- |
| 687.12 | 1.23 | 11.6 | -- | 0.934 | -- | -- | -- | -0.543 | 9.8 | -- | -- | -- | -- |
| 661.75 | 1.2 | 11.7 | -- | -- | -2 | -- | -- | -1.07 | -- | 71.99 | 8644 | -- | -- |
| 739.21 | 1.27 | 11.6 | -- | -- | -- | -- | -- | -0.542 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 285.33 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 3 | 290.51 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 6 | 292.90 | humidity | 90 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 9 | 293.06 | humidity | 90 | 1440 | < th | dose dependent | sin | 1 | NA |
| 10 | 293.13 | humidity | 50 | 1440 | > th | dose dependent | sin | 0 | NA |
| 12 | 293.30 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 15 |
| 15 | 293.41 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 70 | 294.81 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 85 | 295.13 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 152 | 296.39 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 238 | 297.49 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 273 | 297.84 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 294 | 298.09 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 299 | 298.15 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 312 | 298.22 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 358 | 298.36 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 434 | 299.50 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 461 | 299.84 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 464 | 299.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 472 | 299.93 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 475 | 299.95 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 511 | 300.51 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 560 | 301.16 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 628 | 301.95 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 682 | 302.37 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 686 | 302.39 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 22 |
| 698 | 302.43 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 701 | 302.43 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 795 | 302.73 | humidity | 70 | 1440 | > th | dose independent | sin | 20 | NA |
| 811 | 303.05 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 826 | 303.30 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 892 | 303.87 | humidity | 70 | 1440 | < th | dose independent | sin | 19 | NA |
| 963 | 304.44 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |