BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0114000 Os05g0114000|AK069313
(216 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53620.1 | chr3:19881491-19883308 FORWARD LENGTH=217 381 e-106
AT1G01050.1 | chr1:31382-32670 REVERSE LENGTH=213 364 e-101
AT2G46860.1 | chr2:19253843-19255060 FORWARD LENGTH=217 358 1e-99
AT4G01480.1 | chr4:626539-627758 FORWARD LENGTH=217 350 3e-97
AT2G18230.1 | chr2:7932139-7933560 REVERSE LENGTH=219 332 7e-92
AT5G09650.1 | chr5:2991331-2993117 REVERSE LENGTH=301 80 7e-16
>AT3G53620.1 | chr3:19881491-19883308 FORWARD LENGTH=217
Length = 216
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/216 (83%), Positives = 193/216 (89%)
Query: 1 MAPAVEAVEKKTGSAPVKAPALNERILSSMSRRSIAAHPWHDLEIGPGAPTIFNCVIEIP 60
MAP +E K V P LNERILSSMS RS+AAHPWHDLEIGP AP IFNCV+EI
Sbjct: 1 MAPPIEVSTKSYVEKHVSLPTLNERILSSMSHRSVAAHPWHDLEIGPEAPIIFNCVVEIG 60
Query: 61 RGSKVKYELDKKTGLIVVDRVLYSSVVYPHNYGFIPRTLCEDSDPLDVLVIMQEPVIPGC 120
+GSKVKYELDK TGLI VDR+LYSSVVYPHNYGFIPRTLCEDSDP+DVLVIMQEPVIPGC
Sbjct: 61 KGSKVKYELDKTTGLIKVDRILYSSVVYPHNYGFIPRTLCEDSDPIDVLVIMQEPVIPGC 120
Query: 121 FLRAKAIGLMPMIDQGEADDKIIAVCADDPEYKHYNDIKELPPHRLAEIRRFFEDYKKNE 180
FLRAKAIGLMPMIDQGE DDKIIAVCADDPEY+HYNDI ELPPHR+AEIRRFFEDYKKNE
Sbjct: 121 FLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDISELPPHRMAEIRRFFEDYKKNE 180
Query: 181 NKEVAVNDFLPASAAYEAIKHSMDLYATYIVEGLRR 216
NKEVAVNDFLPA+AAY+A++HSMDLYA Y+VE LRR
Sbjct: 181 NKEVAVNDFLPATAAYDAVQHSMDLYADYVVENLRR 216
>AT1G01050.1 | chr1:31382-32670 REVERSE LENGTH=213
Length = 212
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/198 (85%), Positives = 185/198 (93%)
Query: 19 APALNERILSSMSRRSIAAHPWHDLEIGPGAPTIFNCVIEIPRGSKVKYELDKKTGLIVV 78
AP LNERILSS+SRRS+AAHPWHDLEIGPGAP IFN V+EI +GSKVKYELDKKTGLI V
Sbjct: 15 APRLNERILSSLSRRSVAAHPWHDLEIGPGAPQIFNVVVEITKGSKVKYELDKKTGLIKV 74
Query: 79 DRVLYSSVVYPHNYGFIPRTLCEDSDPLDVLVIMQEPVIPGCFLRAKAIGLMPMIDQGEA 138
DR+LYSSVVYPHNYGF+PRTLCED+DP+DVLVIMQEPV+PGCFLRA+AIGLMPMIDQGE
Sbjct: 75 DRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQGEK 134
Query: 139 DDKIIAVCADDPEYKHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASAAYEA 198
DDKIIAVC DDPEYKHY DIKELPPHRL+EIRRFFEDYKKNENKEVAVNDFLP+ +A EA
Sbjct: 135 DDKIIAVCVDDPEYKHYTDIKELPPHRLSEIRRFFEDYKKNENKEVAVNDFLPSESAVEA 194
Query: 199 IKHSMDLYATYIVEGLRR 216
I++SMDLYA YI+ LRR
Sbjct: 195 IQYSMDLYAEYILHTLRR 212
>AT2G46860.1 | chr2:19253843-19255060 FORWARD LENGTH=217
Length = 216
Score = 358 bits (919), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 164/207 (79%), Positives = 188/207 (90%)
Query: 10 KKTGSAPVKAPALNERILSSMSRRSIAAHPWHDLEIGPGAPTIFNCVIEIPRGSKVKYEL 69
+++ +P P LNERILS++SRRS+AAHPWHDLEIGP AP +FN V+EI +GSKVKYEL
Sbjct: 10 QESSQSPRPVPKLNERILSTLSRRSVAAHPWHDLEIGPEAPLVFNVVVEITKGSKVKYEL 69
Query: 70 DKKTGLIVVDRVLYSSVVYPHNYGFIPRTLCEDSDPLDVLVIMQEPVIPGCFLRAKAIGL 129
DKKTGLI VDR+LYSSVVYPHNYGFIPRTLCED+DPLDVLV+MQEPV+PGCFLRA+AIGL
Sbjct: 70 DKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGCFLRARAIGL 129
Query: 130 MPMIDQGEADDKIIAVCADDPEYKHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDF 189
MPMIDQGE DDKIIAVCADDPEYKH+ DIK+L PHRL EIRRFFEDYKKNENK+VAVNDF
Sbjct: 130 MPMIDQGEKDDKIIAVCADDPEYKHFTDIKQLAPHRLQEIRRFFEDYKKNENKKVAVNDF 189
Query: 190 LPASAAYEAIKHSMDLYATYIVEGLRR 216
LP+ +A+EAI++SMDLYA YI+ LRR
Sbjct: 190 LPSESAHEAIQYSMDLYAEYILHTLRR 216
>AT4G01480.1 | chr4:626539-627758 FORWARD LENGTH=217
Length = 216
Score = 350 bits (899), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 164/198 (82%), Positives = 179/198 (90%)
Query: 19 APALNERILSSMSRRSIAAHPWHDLEIGPGAPTIFNCVIEIPRGSKVKYELDKKTGLIVV 78
P LNERILSS+S+RS+AAHPWHDLEIGPGAP IFN VIEI +GSKVKYELDKKTGLI V
Sbjct: 19 TPRLNERILSSLSKRSVAAHPWHDLEIGPGAPVIFNVVIEISKGSKVKYELDKKTGLIKV 78
Query: 79 DRVLYSSVVYPHNYGFIPRTLCEDSDPLDVLVIMQEPVIPGCFLRAKAIGLMPMIDQGEA 138
DR+LYSSVVYPHNYGF+PRTLCED+DP+DVLVIMQEPV+PGCFLRA+AIGLMPMIDQGE
Sbjct: 79 DRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQGEK 138
Query: 139 DDKIIAVCADDPEYKHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASAAYEA 198
DDKIIAVC DDPEYKH +I ELPPHRL+EIRRFFEDYKKNENKEVAVNDFL A EA
Sbjct: 139 DDKIIAVCVDDPEYKHITNINELPPHRLSEIRRFFEDYKKNENKEVAVNDFLQPGPAIEA 198
Query: 199 IKHSMDLYATYIVEGLRR 216
I++SMDLYA YI+ LRR
Sbjct: 199 IQYSMDLYAEYILHTLRR 216
>AT2G18230.1 | chr2:7932139-7933560 REVERSE LENGTH=219
Length = 218
Score = 332 bits (852), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 160/214 (74%), Positives = 180/214 (84%), Gaps = 7/214 (3%)
Query: 10 KKTGSA-----PVKAP--ALNERILSSMSRRSIAAHPWHDLEIGPGAPTIFNCVIEIPRG 62
K GSA P++ P LNER ++ + RS AAHPWHDLEIGP APT+FNCV+EI +G
Sbjct: 5 KDEGSAKGYAFPLRNPNVTLNERNFAAFTHRSAAAHPWHDLEIGPEAPTVFNCVVEISKG 64
Query: 63 SKVKYELDKKTGLIVVDRVLYSSVVYPHNYGFIPRTLCEDSDPLDVLVIMQEPVIPGCFL 122
KVKYELDK +GLI VDRVLYSS+VYPHNYGFIPRT+CEDSDP+DVLV+MQEPV+ G FL
Sbjct: 65 GKVKYELDKNSGLIKVDRVLYSSIVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLTGSFL 124
Query: 123 RAKAIGLMPMIDQGEADDKIIAVCADDPEYKHYNDIKELPPHRLAEIRRFFEDYKKNENK 182
RA+AIGLMPMIDQGE DDKIIAVCADDPE++HY DIKELPPHRLAEIRRFFEDYKKNENK
Sbjct: 125 RARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYRDIKELPPHRLAEIRRFFEDYKKNENK 184
Query: 183 EVAVNDFLPASAAYEAIKHSMDLYATYIVEGLRR 216
+V V FLPA AA +AIK SMDLYA YI GL+R
Sbjct: 185 KVDVEAFLPAQAAIDAIKDSMDLYAAYIKAGLQR 218
>AT5G09650.1 | chr5:2991331-2993117 REVERSE LENGTH=301
Length = 300
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 27/163 (16%)
Query: 39 PWHD--LEIGPGAPTIFNCVIEIPRGSKVKYEL--DKKTGLIVVDRVLYSSVVYPHN--- 91
PWHD L +G G +FN ++EIP+ SK K E+ D+ I D YP+N
Sbjct: 92 PWHDIPLTLGDG---VFNFIVEIPKESKAKMEVATDEDFTPIKQDTKKGKLRYYPYNINW 148
Query: 92 -YGFIPRTLCE-------------DSDPLDVLVIMQEPVIPGCFLRAKAIGLMPMIDQGE 137
YG +P+T + D+DP+DV+ I + G L+ K + + MID+GE
Sbjct: 149 NYGLLPQTWEDPSHANSEVEGCFGDNDPVDVVEIGETQRKIGDILKIKPLAALAMIDEGE 208
Query: 138 ADDKIIAVCADDPEYKHYNDIKELPPH---RLAEIRRFFEDYK 177
D KI+A+ DDP+ ND++++ H L IR +F DYK
Sbjct: 209 LDWKIVAISLDDPKAHLVNDVEDVEKHFPGTLTAIRDWFRDYK 251
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,906,401
Number of extensions: 211044
Number of successful extensions: 453
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 6
Length of query: 216
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 122
Effective length of database: 8,529,465
Effective search space: 1040594730
Effective search space used: 1040594730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)