Os04g0687100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase).
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Os04g0687100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.93 | 0.244 | 12.7 | -0.309 | 0.325 | 1.12 | 0.248 | -1.23 | -0.0398 | 0.207 | 10.9 | 2537 | -- | -- |
| 28.35 | 0.248 | 12.6 | -0.0162 | 0.326 | 1.13 | 0.142 | -- | 0.0414 | 0.0133 | 10.79 | 2555 | -- | -- |
| 27.18 | 0.243 | 12.7 | -0.301 | 0.322 | 1.13 | -- | -1.15 | -0.0354 | 0.288 | 11.03 | 2526 | -- | -- |
| 28.43 | 0.248 | 12.6 | -0.0107 | 0.315 | 1.13 | -- | -- | 0.0397 | 0.366 | 10.98 | 2490 | -- | -- |
| 33.2 | 0.268 | 12.7 | -0.314 | -- | 1.25 | -- | -1.1 | -0.0511 | -- | 11.15 | 2421 | -- | -- |
| 53.19 | 0.342 | 12.6 | 0.431 | 0.448 | -- | 0.185 | -- | 0.271 | 0.408 | -- | -- | -- | -- |
| 53.34 | 0.342 | 12.6 | 0.424 | 0.447 | -- | -- | -- | 0.27 | 0.447 | -- | -- | -- | -- |
| 34.37 | 0.273 | 12.6 | -0.0405 | -- | 1.25 | -- | -- | 0.0214 | -- | 12.5 | 2421 | -- | -- |
| 28.43 | 0.248 | 12.6 | -- | 0.316 | 1.12 | -- | -- | 0.0419 | 0.4 | 10.93 | 2478 | -- | -- |
| 65.9 | 0.379 | 12.6 | 0.439 | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
| 58.07 | 0.356 | 12.6 | -- | 0.453 | -- | -- | -- | 0.223 | 0.494 | -- | -- | -- | -- |
| 34.4 | 0.273 | 12.6 | -- | -- | 1.23 | -- | -- | 0.029 | -- | 12.64 | 2413 | -- | -- |
| 70.99 | 0.393 | 12.6 | -- | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.26 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 5 | 26.40 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 6 | 26.69 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 22 | 26.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 23 | 26.88 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 48 | 27.21 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 67 | 27.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 73 | 27.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 78 | 27.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 109 | 27.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 21 |
| 113 | 27.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 119 | 27.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 120 | 27.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 149 | 27.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 182 | 27.87 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 202 | 27.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 208 | 27.89 | temperature | 10 | 1440 | > th | dose dependent | sin | 5 | NA |
| 213 | 27.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 235 | 27.91 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 245 | 27.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 20 |
| 295 | 27.95 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 304 | 27.95 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 307 | 27.96 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 311 | 27.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 321 | 27.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 335 | 27.98 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 336 | 27.98 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 339 | 27.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 17 |
| 349 | 27.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 11 |
| 509 | 28.10 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 8 |
| 597 | 28.17 | temperature | 10 | 4320 | > th | dose dependent | sin | 16 | NA |
| 759 | 28.25 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 760 | 28.25 | temperature | 10 | 4320 | > th | dose dependent | rect. | 16 | 2 |
| 900 | 28.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 906 | 28.30 | temperature | 30 | 1440 | < th | dose dependent | sin | 6 | NA |
| 932 | 28.31 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 960 | 28.32 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 993 | 28.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 23 |