BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0687100 Os04g0687100|AK073929
(213 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46860.1 | chr2:19253843-19255060 FORWARD LENGTH=217 377 e-105
AT1G01050.1 | chr1:31382-32670 REVERSE LENGTH=213 371 e-103
AT3G53620.1 | chr3:19881491-19883308 FORWARD LENGTH=217 354 2e-98
AT4G01480.1 | chr4:626539-627758 FORWARD LENGTH=217 354 2e-98
AT2G18230.1 | chr2:7932139-7933560 REVERSE LENGTH=219 330 3e-91
AT5G09650.1 | chr5:2991331-2993117 REVERSE LENGTH=301 81 3e-16
>AT2G46860.1 | chr2:19253843-19255060 FORWARD LENGTH=217
Length = 216
Score = 377 bits (967), Expect = e-105, Method: Compositional matrix adjust.
Identities = 178/216 (82%), Positives = 198/216 (91%), Gaps = 3/216 (1%)
Query: 1 MSEE---DTNAAAGQPRRAPKLNERILSSLSRRSVAAHPWHDLEIGPGAPAVFNVVVEIT 57
MSEE +T ++ PR PKLNERILS+LSRRSVAAHPWHDLEIGP AP VFNVVVEIT
Sbjct: 1 MSEEAYEETQESSQSPRPVPKLNERILSTLSRRSVAAHPWHDLEIGPEAPLVFNVVVEIT 60
Query: 58 KGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQEPVIPGS 117
KGSKVKYELDKKTGLIKVDR+LYSSVVYPHNYGFIPRTLCEDNDP+DVLVLMQEPV+PG
Sbjct: 61 KGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGC 120
Query: 118 FLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDISELSPHRLQEIKRFFEDYKKNE 177
FLRARAIGLMPMIDQGEKDDKIIAVCADDPEY+H+ DI +L+PHRLQEI+RFFEDYKKNE
Sbjct: 121 FLRARAIGLMPMIDQGEKDDKIIAVCADDPEYKHFTDIKQLAPHRLQEIRRFFEDYKKNE 180
Query: 178 NKEVAVDAFLPANTARDAIQYSMDLYAQYILQSLRQ 213
NK+VAV+ FLP+ +A +AIQYSMDLYA+YIL +LR+
Sbjct: 181 NKKVAVNDFLPSESAHEAIQYSMDLYAEYILHTLRR 216
>AT1G01050.1 | chr1:31382-32670 REVERSE LENGTH=213
Length = 212
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/213 (83%), Positives = 194/213 (91%), Gaps = 1/213 (0%)
Query: 1 MSEEDTNAAAGQPRRAPKLNERILSSLSRRSVAAHPWHDLEIGPGAPAVFNVVVEITKGS 60
MSEE + Q R AP+LNERILSSLSRRSVAAHPWHDLEIGPGAP +FNVVVEITKGS
Sbjct: 1 MSEETKDNQRLQ-RPAPRLNERILSSLSRRSVAAHPWHDLEIGPGAPQIFNVVVEITKGS 59
Query: 61 KVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQEPVIPGSFLR 120
KVKYELDKKTGLIKVDR+LYSSVVYPHNYGF+PRTLCEDNDP+DVLV+MQEPV+PG FLR
Sbjct: 60 KVKYELDKKTGLIKVDRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCFLR 119
Query: 121 ARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDISELSPHRLQEIKRFFEDYKKNENKE 180
ARAIGLMPMIDQGEKDDKIIAVC DDPEY+HY DI EL PHRL EI+RFFEDYKKNENKE
Sbjct: 120 ARAIGLMPMIDQGEKDDKIIAVCVDDPEYKHYTDIKELPPHRLSEIRRFFEDYKKNENKE 179
Query: 181 VAVDAFLPANTARDAIQYSMDLYAQYILQSLRQ 213
VAV+ FLP+ +A +AIQYSMDLYA+YIL +LR+
Sbjct: 180 VAVNDFLPSESAVEAIQYSMDLYAEYILHTLRR 212
>AT3G53620.1 | chr3:19881491-19883308 FORWARD LENGTH=217
Length = 216
Score = 354 bits (909), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 165/197 (83%), Positives = 182/197 (92%)
Query: 17 PKLNERILSSLSRRSVAAHPWHDLEIGPGAPAVFNVVVEITKGSKVKYELDKKTGLIKVD 76
P LNERILSS+S RSVAAHPWHDLEIGP AP +FN VVEI KGSKVKYELDK TGLIKVD
Sbjct: 20 PTLNERILSSMSHRSVAAHPWHDLEIGPEAPIIFNCVVEIGKGSKVKYELDKTTGLIKVD 79
Query: 77 RVLYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQEPVIPGSFLRARAIGLMPMIDQGEKD 136
R+LYSSVVYPHNYGFIPRTLCED+DP+DVLV+MQEPVIPG FLRA+AIGLMPMIDQGEKD
Sbjct: 80 RILYSSVVYPHNYGFIPRTLCEDSDPIDVLVIMQEPVIPGCFLRAKAIGLMPMIDQGEKD 139
Query: 137 DKIIAVCADDPEYRHYNDISELSPHRLQEIKRFFEDYKKNENKEVAVDAFLPANTARDAI 196
DKIIAVCADDPEYRHYNDISEL PHR+ EI+RFFEDYKKNENKEVAV+ FLPA A DA+
Sbjct: 140 DKIIAVCADDPEYRHYNDISELPPHRMAEIRRFFEDYKKNENKEVAVNDFLPATAAYDAV 199
Query: 197 QYSMDLYAQYILQSLRQ 213
Q+SMDLYA Y++++LR+
Sbjct: 200 QHSMDLYADYVVENLRR 216
>AT4G01480.1 | chr4:626539-627758 FORWARD LENGTH=217
Length = 216
Score = 354 bits (908), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 164/198 (82%), Positives = 183/198 (92%)
Query: 16 APKLNERILSSLSRRSVAAHPWHDLEIGPGAPAVFNVVVEITKGSKVKYELDKKTGLIKV 75
P+LNERILSSLS+RSVAAHPWHDLEIGPGAP +FNVV+EI+KGSKVKYELDKKTGLIKV
Sbjct: 19 TPRLNERILSSLSKRSVAAHPWHDLEIGPGAPVIFNVVIEISKGSKVKYELDKKTGLIKV 78
Query: 76 DRVLYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQEPVIPGSFLRARAIGLMPMIDQGEK 135
DR+LYSSVVYPHNYGF+PRTLCEDNDP+DVLV+MQEPV+PG FLRARAIGLMPMIDQGEK
Sbjct: 79 DRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQGEK 138
Query: 136 DDKIIAVCADDPEYRHYNDISELSPHRLQEIKRFFEDYKKNENKEVAVDAFLPANTARDA 195
DDKIIAVC DDPEY+H +I+EL PHRL EI+RFFEDYKKNENKEVAV+ FL A +A
Sbjct: 139 DDKIIAVCVDDPEYKHITNINELPPHRLSEIRRFFEDYKKNENKEVAVNDFLQPGPAIEA 198
Query: 196 IQYSMDLYAQYILQSLRQ 213
IQYSMDLYA+YIL +LR+
Sbjct: 199 IQYSMDLYAEYILHTLRR 216
>AT2G18230.1 | chr2:7932139-7933560 REVERSE LENGTH=219
Length = 218
Score = 330 bits (846), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 161/214 (75%), Positives = 179/214 (83%), Gaps = 4/214 (1%)
Query: 4 EDTNAAAGQ--PRRAPK--LNERILSSLSRRSVAAHPWHDLEIGPGAPAVFNVVVEITKG 59
+D +A G P R P LNER ++ + RS AAHPWHDLEIGP AP VFN VVEI+KG
Sbjct: 5 KDEGSAKGYAFPLRNPNVTLNERNFAAFTHRSAAAHPWHDLEIGPEAPTVFNCVVEISKG 64
Query: 60 SKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQEPVIPGSFL 119
KVKYELDK +GLIKVDRVLYSS+VYPHNYGFIPRT+CED+DPMDVLVLMQEPV+ GSFL
Sbjct: 65 GKVKYELDKNSGLIKVDRVLYSSIVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLTGSFL 124
Query: 120 RARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDISELSPHRLQEIKRFFEDYKKNENK 179
RARAIGLMPMIDQGEKDDKIIAVCADDPE+RHY DI EL PHRL EI+RFFEDYKKNENK
Sbjct: 125 RARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYRDIKELPPHRLAEIRRFFEDYKKNENK 184
Query: 180 EVAVDAFLPANTARDAIQYSMDLYAQYILQSLRQ 213
+V V+AFLPA A DAI+ SMDLYA YI L++
Sbjct: 185 KVDVEAFLPAQAAIDAIKDSMDLYAAYIKAGLQR 218
>AT5G09650.1 | chr5:2991331-2993117 REVERSE LENGTH=301
Length = 300
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 23/166 (13%)
Query: 36 PWHDLEIGPGAPAVFNVVVEITKGSKVKYEL--DKKTGLIKVDRVLYSSVVYPHN----Y 89
PWHD+ + G VFN +VEI K SK K E+ D+ IK D YP+N Y
Sbjct: 92 PWHDIPLTLGD-GVFNFIVEIPKESKAKMEVATDEDFTPIKQDTKKGKLRYYPYNINWNY 150
Query: 90 GFIPRTL------------C-EDNDPMDVLVLMQEPVIPGSFLRARAIGLMPMIDQGEKD 136
G +P+T C DNDP+DV+ + + G L+ + + + MID+GE D
Sbjct: 151 GLLPQTWEDPSHANSEVEGCFGDNDPVDVVEIGETQRKIGDILKIKPLAALAMIDEGELD 210
Query: 137 DKIIAVCADDPEYRHYNDISELSPH---RLQEIKRFFEDYKKNENK 179
KI+A+ DDP+ ND+ ++ H L I+ +F DYK + K
Sbjct: 211 WKIVAISLDDPKAHLVNDVEDVEKHFPGTLTAIRDWFRDYKIPDGK 256
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,650,419
Number of extensions: 198186
Number of successful extensions: 463
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 6
Length of query: 213
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 119
Effective length of database: 8,529,465
Effective search space: 1015006335
Effective search space used: 1015006335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)