BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0929500 Os01g0929500|AK111399
(300 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0929500 Similar to Carbonyl reductase-like protein 565 e-161
Os02g0607700 Glucose/ribitol dehydrogenase family protein 215 3e-56
Os04g0531900 Glucose/ribitol dehydrogenase family protein 172 3e-43
Os04g0532100 Glucose/ribitol dehydrogenase family protein 146 2e-35
Os07g0685800 Glucose/ribitol dehydrogenase family protein 146 2e-35
Os02g0640600 127 8e-30
Os04g0496000 Glucose/ribitol dehydrogenase family protein 114 1e-25
Os04g0531750 Glucose/ribitol dehydrogenase family protein 93 3e-19
AK108316 81 1e-15
Os10g0548000 Similar to Short-chain dehydrogenase Tic32 74 9e-14
Os09g0570300 Similar to Short-chain dehydrogenase Tic32 74 1e-13
Os12g0633800 65 9e-11
>Os01g0929500 Similar to Carbonyl reductase-like protein
Length = 300
Score = 565 bits (1455), Expect = e-161, Method: Compositional matrix adjust.
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 28 GIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVEG 87
GIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVEG
Sbjct: 28 GIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVEG 87
Query: 88 FATWVERTHGGVHVLVNNAGVNFNRGADNSVEFAEQVIETNYFGTKRMIEAMMPLMITSP 147
FATWVERTHGGVHVLVNNAGVNFNRGADNSVEFAEQVIETNYFGTKRMIEAMMPLMITSP
Sbjct: 88 FATWVERTHGGVHVLVNNAGVNFNRGADNSVEFAEQVIETNYFGTKRMIEAMMPLMITSP 147
Query: 148 HGGRIVNVSSRLGRVNGRRNRIGDPSLRERLLNDDHLSEELINEMVMKFLEQTKQDNWSS 207
HGGRIVNVSSRLGRVNGRRNRIGDPSLRERLLNDDHLSEELINEMVMKFLEQTKQDNWSS
Sbjct: 148 HGGRIVNVSSRLGRVNGRRNRIGDPSLRERLLNDDHLSEELINEMVMKFLEQTKQDNWSS 207
Query: 208 GNEWPQMYTDYSISKLAVNAYTRLLARRLLDRPEGQKIYINCFCPGWVKTAMTGWEGNIS 267
GNEWPQMYTDYSISKLAVNAYTRLLARRLLDRPEGQKIYINCFCPGWVKTAMTGWEGNIS
Sbjct: 208 GNEWPQMYTDYSISKLAVNAYTRLLARRLLDRPEGQKIYINCFCPGWVKTAMTGWEGNIS 267
Query: 268 AEEGADTGVWLALVPQEQATIGKFFAERREISF 300
AEEGADTGVWLALVPQEQATIGKFFAERREISF
Sbjct: 268 AEEGADTGVWLALVPQEQATIGKFFAERREISF 300
>Os02g0607700 Glucose/ribitol dehydrogenase family protein
Length = 298
Score = 215 bits (547), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/267 (47%), Positives = 171/267 (64%), Gaps = 12/267 (4%)
Query: 28 GIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVEG 87
GIG+ A +LA GL VVLT+RD ARG A +RA + SV +R+LDV+D ASV
Sbjct: 31 GIGHALAARLAEQGLAVVLTARDGARGEAAAAALRARGLR---SVRFRRLDVSDPASVAA 87
Query: 88 FATWVERTHGGVHVLVNNAGVNFNRGADNSVEFAEQVIETNYFGTKRMIEAMMPLMITSP 147
FA+W+ GG+ +LVNNA V+FN NSVE AE V+ TN++G K +IEA++PL S
Sbjct: 88 FASWLRDELGGLDILVNNAAVSFNEIDTNSVEHAETVLRTNFYGAKMLIEALLPLFRRSA 147
Query: 148 HGGRIVNVSSRLGRVNGRRNRIGDPSLRERLLNDDHLSEELINEMVMKFLEQTKQDNWSS 207
RI+N+SS+LG + N++ DPSLR LL++ L+E I M +FL + K WS+
Sbjct: 148 ANSRILNISSQLGLL----NKVRDPSLRSMLLDEASLTEGKIERMASRFLAEVKDGTWSA 203
Query: 208 -GNEWPQMYTDYSISKLAVNAYTRLLARRLLDRPEGQKIYINCFCPGWVKTAMT-GWEGN 265
G WP ++TDY++SKLA+NAY+R+LA RL G ++ +NCFCPG+ +T MT GW G
Sbjct: 204 PGRGWPAVWTDYAVSKLALNAYSRVLAARLAR--GGDRVAVNCFCPGFTRTDMTRGW-GT 260
Query: 266 ISAEEGADTGVWLALVPQEQATIGKFF 292
+AEE LAL+P GKFF
Sbjct: 261 RTAEEAGRVAAGLALLPPGDLPTGKFF 287
>Os04g0531900 Glucose/ribitol dehydrogenase family protein
Length = 307
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 171/299 (57%), Gaps = 41/299 (13%)
Query: 28 GIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVEG 87
GIG E RQLA G+ VVLT+RD RG +A E++ +G SV + QL+VTD++SV
Sbjct: 22 GIGLEVCRQLAADGITVVLTARDETRGVEAAEKL---SGMGLSSVVFHQLEVTDSSSVAR 78
Query: 88 FATWVERTHGGVHVLVNNA---GVNFNRGAD-NSVEF----------------------A 121
A +++ G + +LVNNA G+ + +G D N +F A
Sbjct: 79 LADFLKTRFGKLDILVNNAAVGGMEYVQGVDTNKEQFVSMDKKQRLAWLNKQGRETYDAA 138
Query: 122 EQVIETNYFGTKRMIEAMMPLMITSPHGGRIVNVSSRLGRVNGRRNRIGDPSLRERLLND 181
+ ++TNY+GTK +I+A++PL++ S GRIVNVSS G + + + LR+ L +
Sbjct: 139 KNGVQTNYYGTKIVIQALLPLLLQSSGEGRIVNVSSDFGLL----RVVNNEDLRKELDDV 194
Query: 182 DHLSEELINEMVMKFLEQTKQDNWSSGNEWPQMYTDYSISKLAVNAYTRLLARRLLDRPE 241
D+L+EE ++E++ FL+ + + + WP + Y +K+A+NAYTR+LARR PE
Sbjct: 195 DNLTEERLDEVLDSFLKDFEAGALEA-HGWPTAFAAYKTAKVAMNAYTRILARR---HPE 250
Query: 242 GQKIYINCFCPGWVKTAMTGWEGNISAEEGADTGVWLALVPQEQATIGKFFAERREISF 300
+ +NC PG+VKT MT G ++ EEG V +AL+P T G FFAE +E SF
Sbjct: 251 ---LRVNCAHPGYVKTDMTIDSGFLTPEEGGRNVVTVALLPDGGPT-GAFFAEGKEASF 305
>Os04g0532100 Glucose/ribitol dehydrogenase family protein
Length = 309
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 159/303 (52%), Gaps = 46/303 (15%)
Query: 28 GIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVEG 87
GIG E RQLA +G VVLT+RD A+G A E++ G SV + QLDVTDA+S+
Sbjct: 22 GIGLEVCRQLAGNGATVVLTARDEAKGAAAVEKLH---GLGLSSVIFHQLDVTDASSIAR 78
Query: 88 FATWVERTHGGVHVLVNNAGV------------------NFN------------RGADNS 117
A ++E G + +LVNNA V F+ + +
Sbjct: 79 LAEFLESRFGRLDILVNNAAVGGIVPVDDPSFGLLPTEEKFSGMDGHQRIEWMWKNCRQT 138
Query: 118 VEFAEQVIETNYFGTKRMIEAMMPLMITSPHGGRIVNVSSRLGRVNGRRNRIGDPSLRER 177
+ A+ ++TNY+GTK + EA++PL+ +S GRIVNV+S G + N L+
Sbjct: 139 YDAAKAGLKTNYYGTKNVTEALLPLLQSSSD-GRIVNVASSFGLLRFFTNE----ELKRE 193
Query: 178 LLNDDHLSEELINEMVMKFLEQTKQDNWSSGNEWPQMYTDYSISKLAVNAYTRLLARRLL 237
L + D LSEE ++E++ F+ + + WP ++ Y ++K A++AY R+LAR+
Sbjct: 194 LNDADSLSEERLDELLGMFVRDFEAGAVAE-RGWPTEFSAYKVAKAAMSAYARILARK-- 250
Query: 238 DRPEGQKIYINCFCPGWVKTAMTGWEGNISAEEGADTGVWLALVPQEQATIGKFFAERRE 297
RP + +NC PG+VKT +T G ++ EEGA V +AL+P T G F +E
Sbjct: 251 -RP---ALRVNCVDPGYVKTDLTRNSGLLTPEEGASRVVAVALLPAGGPT-GALFDGGKE 305
Query: 298 ISF 300
SF
Sbjct: 306 ASF 308
>Os07g0685800 Glucose/ribitol dehydrogenase family protein
Length = 373
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 143/292 (48%), Gaps = 41/292 (14%)
Query: 28 GIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVEG 87
GIG E RQLA G+ V+LT+RD RG+DA E + + + + QLD+ D S
Sbjct: 87 GIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESNLSNII--FHQLDILDGNSRAS 144
Query: 88 FATWVERTHGGVHVLVNNAGVN-------------------FNRGADNSVEF-------- 120
A ++ G + +LVNNAGV + A N ++
Sbjct: 145 LARYINSRFGKLDILVNNAGVGGVAVDQDGLRALNIDPRVWLSGKAVNLIQSVIVQTYDE 204
Query: 121 AEQVIETNYFGTKRMIEAMMPLMITSPHGGRIVNVSSRLGRVNGRRNRIGDPSLRERLLN 180
A + + TNY+G K + EA++PL+ SP G RIVN +S + RI + LR+ L N
Sbjct: 205 AVKCLNTNYYGLKWITEALLPLLKQSPSGARIVNTTS----LRSELKRIPNEKLRDELRN 260
Query: 181 DDHLSEELINEMVMKFLEQTKQDNWSSGNEWPQMYTDYSISKLAVNAYTRLLARRLLDRP 240
D E I M+ +FL K + WP M YS+SK VN YTR+LA+R P
Sbjct: 261 IDIWDEARIEAMLNEFLLDLKNERLEEAG-WPTMLPAYSMSKTVVNLYTRILAKR---HP 316
Query: 241 EGQKIYINCFCPGWVKTAMTGWEGNISAEEGADTGVWLALVPQEQATIGKFF 292
E + INC PG+V T + G I EEGA V AL+PQ+ T G +F
Sbjct: 317 E---MRINCVHPGFVNTEINWNTGIIPPEEGARGAVKAALLPQDGPT-GCYF 364
>Os02g0640600
Length = 403
Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 148/281 (52%), Gaps = 48/281 (17%)
Query: 28 GIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVS-VEWRQLDVTDAASVE 86
G+G E RQLA++G+ VVLT+RD +G A + + + G+S V + QLDVTD +S+
Sbjct: 37 GVGLEICRQLASNGILVVLTARDEKKGSQAVKALEQS----GLSGVIFHQLDVTDRSSIM 92
Query: 87 GFATWVERTHGGVHVLVNNAGV-------------------------------NFNRGAD 115
++ G ++LVNNA + ++
Sbjct: 93 LLVEFIRTKFGKFNILVNNAAIGGTTIDPERLRELLEQDPKASFQEDLMGFLNSYMGSLQ 152
Query: 116 NSVEFAEQVIETNYFGTKRMIEAMMPLMITSPHGGRIVNVSSRLGRVNGRRNRIGDPSLR 175
+ E A++ +E N++GTK + + +MPL++ S + G+++N++S++ ++ I + +
Sbjct: 153 QNYEMAKECLEINFYGTKDVTDCLMPLLLLS-NSGKVINLTSKISQL----QFISNEGVI 207
Query: 176 ERLLNDDHLSEELINEMVMKFLEQTKQDNWSSGNEWPQMYTDYSISKLAVNAYTRLLARR 235
+ L + D+LS+E + ++ FL+ K N + + W + + Y++SK VNAY+RLLA+R
Sbjct: 208 KVLSDIDNLSDEKLKDVASIFLKDFKDGNLEA-HGWQPVVSAYAVSKTLVNAYSRLLAKR 266
Query: 236 LLDRPEGQKIYINCFCPGWVKTAMTGWEGNISAEEGADTGV 276
P + + C PG+VKT M G IS EEGA+ V
Sbjct: 267 ---HPS---LEVCCVNPGFVKTDMNYGIGLISVEEGANAPV 301
>Os04g0496000 Glucose/ribitol dehydrogenase family protein
Length = 142
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 82/127 (64%), Gaps = 5/127 (3%)
Query: 167 NRIGDPSLRERLLNDDHLSEELINEMVMKFLEQTKQDNWSSGNEWPQMYTDYSISKLAVN 226
++ DP L+ L +++ L+E + M +FL Q K W G WP+++TDYS+SKLA+N
Sbjct: 9 QKVSDPELKRLLQDEERLTEAEVEGMASRFLAQVKDGTWR-GQGWPKVWTDYSVSKLALN 67
Query: 227 AYTRLLARRLLDRPEGQKIYINCFCPGWVKTAMT-GWEGNISAEEGADTGVWLALVPQEQ 285
AY R+LARRL R G ++ +NCFCPG+ +T MT GW G +AEE A+ G LAL+P +
Sbjct: 68 AYARVLARRLQAR--GDRVSVNCFCPGFTRTDMTRGW-GKRTAEEAAEIGARLALLPPGE 124
Query: 286 ATIGKFF 292
G FF
Sbjct: 125 LPTGTFF 131
>Os04g0531750 Glucose/ribitol dehydrogenase family protein
Length = 185
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 29/159 (18%)
Query: 28 GIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVEG 87
GIG E RQLA G+ VVLT+RD RG +A E++R G V + L+VTD++SV
Sbjct: 22 GIGLEVCRQLAADGITVVLTARDETRGVEAAEKLR---GMGLSCVIFHHLEVTDSSSVSR 78
Query: 88 FATWVERTHGGVHVLVNNAGVN--------------------------FNRGADNSVEFA 121
A ++ G + +LVNNA V+ N+ + + A
Sbjct: 79 LADFLTTRFGKLEILVNNAAVSGMEHAQRVDTNEEQFVGMDKQQRLEWLNKQGRETYDAA 138
Query: 122 EQVIETNYFGTKRMIEAMMPLMITSPHGGRIVNVSSRLG 160
+ ++TNY+GTK +I+ ++PL++ S GRIVNVSS G
Sbjct: 139 KNGVQTNYYGTKLVIQTLLPLLLQSSGEGRIVNVSSDAG 177
>AK108316
Length = 287
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 131/281 (46%), Gaps = 28/281 (9%)
Query: 28 GIGYEAARQLATH--GLHVVLTSRDAARGRDATEQIRAAAGKPGVS-VEWRQLDVTDAAS 84
GIGYEA + LA + LT+R + G+DA ++++ A + S V L++TD +S
Sbjct: 17 GIGYEAVKHLAQKLPDATIYLTARSQSNGKDAVDKMKKEAPEADFSNVRIILLEITDTSS 76
Query: 85 VEGFATWVERTHGGVHVLVNNAGVNFNRGADNSVEFAEQVIETNYFGTKRMIEAMMPLMI 144
+ V++ G + VL++N+G+ G S + V + N G K IEA I
Sbjct: 77 IREAVATVQKQSGTLDVLLHNSGILQVPGEKGS----KGVFDVNVRGAKACIEAFA--QI 130
Query: 145 TSPHGGRIVNVSSRLGRVNGRRNRIGDPSLRERLLNDDHLSEELINEMVMKFL-----EQ 199
+ G+++ VSS +G + + +L+++LLN + + + +L Q
Sbjct: 131 LTKDTGKVIVVSSEVGSWSTAAQ---EKALQDKLLNGSKTDWKQVEAWMNDWLLHEQGGQ 187
Query: 200 TKQDNWSSGNEWPQMYTDYSISKLAVNAYTRLLARRLLDRPEGQKIYINCFCPGWVKTAM 259
Q+ W ++ + Y++SKL +NAY R + Q + CPG+ T +
Sbjct: 188 GVQEPWKPLDQLEN--SGYAVSKLFLNAYLRNYVL------QSQHPRLAVVCPGYCATDL 239
Query: 260 TGWEGNISAEEGADTGVWLALVPQEQATIGKFFAERREISF 300
G+ G+ A +G ++ W E G F+ + +++ F
Sbjct: 240 NGFSGHRPASQGGESVCWPVFNEFEN---GHFYQDGKDLPF 277
>Os10g0548000 Similar to Short-chain dehydrogenase Tic32
Length = 319
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 55/283 (19%)
Query: 28 GIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVEG 87
GIG E R LA G+ VV+ R+ A G A E IRA G V ++D++ SV
Sbjct: 42 GIGLETTRVLALRGVRVVMAVRNVAAGHKAREAIRAEI--HGAIVHVLEMDLSSMDSVRR 99
Query: 88 FATWVERTHGGVHVLVNNAGVNFNRGADNSVEFAEQVIETNYFG----TKRMIEAMMPLM 143
FA+ + + +++L+NNAG+ ++ S++ E TN+ G T ++E M
Sbjct: 100 FASEFDSLNLPLNILINNAGI-LSKDCIRSIDGLELHFATNHIGHFLLTNLLLENMKSTS 158
Query: 144 ITSPHGGRIVNVSSRLGRVNGRRNRIGDPSLRERLLNDDHLSEELINEMVMKFLEQTKQD 203
T+ GRI+NVSS + ++ + E D
Sbjct: 159 RTTGVEGRIINVSS--------------------------------SGHILTYPEGICFD 186
Query: 204 NWSSGNEWPQMYTDYSISKLAVNAYTRLLARRLLDRPEGQKIYINCFCPGWVKT------ 257
+ + + Y Y SKLA ++ LAR L + +G I N PG+V T
Sbjct: 187 SVKDLSRFST-YIAYGQSKLANILHSTELARIL--KGDGVNISANAIHPGFVGTNLFKNW 243
Query: 258 ----AMTGWEGNI---SAEEGADTGVWLALVPQEQATIGKFFA 293
A+ G I + E+GA T ++AL PQ GK+F+
Sbjct: 244 TMANAVVNTIGRIVCKTVEQGAATTCYVALHPQVTGISGKYFS 286
>Os09g0570300 Similar to Short-chain dehydrogenase Tic32
Length = 316
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 63/288 (21%)
Query: 28 GIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVEG 87
GIG E AR LA G HVV+ R+ A + + I A A P S++ +LD+ SV
Sbjct: 43 GIGAETARVLAIRGAHVVMAVRNLAAAQPVRDAILADA--PAASLDLMELDLASMDSVRA 100
Query: 88 FATWVERTHGGVHVLVNNAGV---NFNRGADN-SVEFAEQVIETNYFG----TKRMIEAM 139
FA+ +++L+NNAGV F+ D ++FA TN+ G T ++E M
Sbjct: 101 FASDFAAKGLPLNILINNAGVMATPFSLSKDGIELQFA-----TNHVGHFLLTHLLLETM 155
Query: 140 MPLMITSPHGGRIVNVSSRLGRVNGRRNRIGDPSLRERLLNDDHLSEELINEMVMKFLEQ 199
S GRIVNVSS R R ++F +
Sbjct: 156 KKTSRESNVEGRIVNVSSEGHRFAYREG--------------------------IRFAKI 189
Query: 200 TKQDNWSSGNEWPQMYTDYSISKLAVNAYTRLLARRLLDRPEGQKIYINCFCPGWVKTAM 259
+ ++S + Q SKLA + LARR D EG I N PG + T +
Sbjct: 190 NDESEYNSIGAYGQ-------SKLANILHANELARRFKD--EGVNITANSLHPGSIITNL 240
Query: 260 TGWEGNI-------------SAEEGADTGVWLALVPQEQATIGKFFAE 294
+ +A++GA T ++AL PQ + GK+F++
Sbjct: 241 LRHHSILDVLHRTLGKLVLKNAQQGAATTCYVALHPQVKGVSGKYFSD 288
>Os12g0633800
Length = 302
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 28 GIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVEG 87
GIGYE + A+ G VV T D +++ AG + + LDVT SVEG
Sbjct: 29 GIGYEYCKAFASLGCRVVAT--------DVPDRVPDLAG---LDADHLPLDVTSDESVEG 77
Query: 88 FATWVERTHGGVHVLVNNAGVNFNRG-ADNSVEFAEQVIETNYFGTKRMIEAMMPLMITS 146
V HG V VLVNNAG+ A+ E + ++ N+ G RM+ A+ P M S
Sbjct: 78 AVARVLAEHGRVDVLVNNAGIGCTGPLAELRGEAVRRAMDVNFLGQLRMVRAVAPHM-AS 136
Query: 147 PHGGRIVNVSSRLG 160
GR+VNV S +G
Sbjct: 137 RRSGRVVNVGSVVG 150
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,222,296
Number of extensions: 374387
Number of successful extensions: 1146
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1130
Number of HSP's successfully gapped: 12
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)