BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0859300 Os01g0859300|AK070998
(323 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0859300 Similar to ABA response element binding factor... 586 e-168
Os01g0813100 Eukaryotic transcription factor, DNA-binding d... 118 6e-27
Os06g0211200 Similar to Abscisic acid responsive elements-b... 114 1e-25
Os05g0489700 Similar to BZIP protein BZO2H3 (Fragment) 92 6e-19
Os07g0686100 Similar to Abscisic acid responsive elements-b... 88 7e-18
Os08g0472000 TRAB1 (BZIP transcription factor) 86 2e-17
Os09g0456200 Similar to BZIP transcription factor ABI5 80 2e-15
Os02g0766700 Similar to Abscisic acid responsive elements-b... 79 4e-15
Os03g0322700 70 2e-12
>Os01g0859300 Similar to ABA response element binding factor (Fragment)
Length = 323
Score = 586 bits (1511), Expect = e-168, Method: Compositional matrix adjust.
Identities = 292/323 (90%), Positives = 292/323 (90%)
Query: 1 SMNMDEFVANIWNAEEFQATTGGCKGAMEEAKVVXXXXXXXXXXXXXLCRQGSFSLPLPL 60
SMNMDEFVANIWNAEEFQATTGGCKGAMEEAKVV LCRQGSFSLPLPL
Sbjct: 1 SMNMDEFVANIWNAEEFQATTGGCKGAMEEAKVVDSGSGSGDAGGSGLCRQGSFSLPLPL 60
Query: 61 CQKTVEEVWTEINQAPAHTSAPASALQPHAGSGGVAANDRQVTLGEMTLEDFLVKAGVVR 120
CQKTVEEVWTEINQAPAHTSAPASALQPHAGSGGVAANDRQVTLGEMTLEDFLVKAGVVR
Sbjct: 61 CQKTVEEVWTEINQAPAHTSAPASALQPHAGSGGVAANDRQVTLGEMTLEDFLVKAGVVR 120
Query: 121 GSFTGQAAMGSGMVNGPVNPMQQGQGGPMMFPVGPVNAXXXXXXXXXXXXXXXXXXAIVP 180
GSFTGQAAMGSGMVNGPVNPMQQGQGGPMMFPVGPVNA AIVP
Sbjct: 121 GSFTGQAAMGSGMVNGPVNPMQQGQGGPMMFPVGPVNAMYPVMGDGMGYPGGYNGMAIVP 180
Query: 181 PPPPAQGAMVVVSPGSSDGMSAMTHADMMNCIGNGMMIENGTRKRPHREDGCAEKTVERR 240
PPPPAQGAMVVVSPGSSDGMSAMTHADMMNCIGNGMMIENGTRKRPHREDGCAEKTVERR
Sbjct: 181 PPPPAQGAMVVVSPGSSDGMSAMTHADMMNCIGNGMMIENGTRKRPHREDGCAEKTVERR 240
Query: 241 QRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARLKEAEKTVLLTKKQMLVEKMME 300
QRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARLKEAEKTVLLTKKQMLVEKMME
Sbjct: 241 QRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARLKEAEKTVLLTKKQMLVEKMME 300
Query: 301 QSKEKMNANRGGSQLRRSGSCMW 323
QSKEKMNANRGGSQLRRSGSCMW
Sbjct: 301 QSKEKMNANRGGSQLRRSGSCMW 323
>Os01g0813100 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 345
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 145/309 (46%), Gaps = 48/309 (15%)
Query: 1 SMNMDEFVANIWNAEEFQATTGGCKGAMEEAKVVXXXXXXXXXXXXXLCRQGSFSLPLPL 60
SMN+DE + +++ A G + ++ + L RQGS ++P L
Sbjct: 50 SMNLDELLRSVFPDGLAIADGAGATTSSQQHQ-----------PGSGLLRQGSITMPPEL 98
Query: 61 CQKTVEEVWTEINQAPAHTSAPASALQPHAGSGGVAANDRQVTLGEMTLEDFLVKAGVV- 119
+KTV+EVW I AP + +RQ TLGE+TLEDFLVKAGVV
Sbjct: 99 SKKTVDEVWKGIQAAPKRNAETGGGGGGGR-----RRRERQPTLGEVTLEDFLVKAGVVT 153
Query: 120 RGSFTGQAAMGSGMVNGPVNPMQQGQGGPMMFPVGPVN------AXXXXXXXXXXXXXXX 173
+GS + +G+ V+P+ +G + P +
Sbjct: 154 QGSLKELSDVGN------VDPVGRGVTATGTVDLAPGSHWIEQYKQQIASTDAHHHGQQG 207
Query: 174 XXXAIVP----PPPPAQGAMVVVSPGSSDGMSAMTHADMMNCIGNGMMIENGTRKRPHRE 229
A P P P G ++ P SDG ++ +GM+ + P R+
Sbjct: 208 VQGAYFPNRLVPQPLNVGPGAILEPSYSDGQTS-----------SGMIGGMSDSQTPGRK 256
Query: 230 DG----CAEKTVERRQRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARLKEAEKT 285
G A+K +ERRQ+RMIKNRESAARSRARKQAYT ELE +++ L++EN RLK +++
Sbjct: 257 RGMSGDVADKLMERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENVRLKRQKES 316
Query: 286 VLLTKKQML 294
L +++
Sbjct: 317 DYLELDELI 325
>Os06g0211200 Similar to Abscisic acid responsive elements-binding factor
(ABA-responsive element binding protein 1) (AREB1)
Length = 324
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 140/313 (44%), Gaps = 55/313 (17%)
Query: 1 SMNMDEFVANIWNAEEFQATTGGCKGAMEEAKVVXXXXXXXXXXXXXLCRQGSFSLPLPL 60
SMNMDE + NIW AEE QA A A V + RQGS +LP L
Sbjct: 37 SMNMDELLRNIWTAEESQAIAPAAAAASAAAVV-----GDAQQQQQPIQRQGSLTLPRTL 91
Query: 61 CQKTVEEVWTEINQAPAHTSAPASALQPHAGSGGVAAND------------RQVTLGEMT 108
QKTV+EVW +I G GG D RQ TLGEMT
Sbjct: 92 SQKTVDEVWRDI-----------------MGLGGSDDEDPAAAAAAAAPAQRQPTLGEMT 134
Query: 109 LEDFLVKAGVVRGSFTGQAAMGSGMVNGPVNPMQQGQGGPMMFPVGPVNAXXXXXXXXXX 168
LE+FLV+AGVVR MG +V P Q Q +FP V A
Sbjct: 135 LEEFLVRAGVVRED------MGQTIVLPP-----QAQA---LFPGSNVVAPAMQLANGML 180
Query: 169 XXXXXXXXAIVPPPPPAQGAMVVVSPGSSDGMSAMTHADMMNCIGNGMMIENGTRKRPHR 228
A +P +G+ + D+ + + R R
Sbjct: 181 PGVVGVAPGAAA----AMTVAAPATPVVLNGLGKVEGGDLSSLSPVPYPFDTALR---VR 233
Query: 229 EDGCAEKTVERRQRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARLKEAEKTVLL 288
+ EK VERRQRRMIKNRESAARSRARKQAY +ELEAE+ LK++ A L++ + ++
Sbjct: 234 KGPTVEKVVERRQRRMIKNRESAARSRARKQAYIMELEAEVAKLKEQKAELQKKQVEMIQ 293
Query: 289 TKKQMLVEKMMEQ 301
+ ++E++ +Q
Sbjct: 294 KQNDEVMERITQQ 306
>Os05g0489700 Similar to BZIP protein BZO2H3 (Fragment)
Length = 335
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 111/242 (45%), Gaps = 36/242 (14%)
Query: 48 LCRQGSFSLPLPLCQKTVEEVWTEINQAPAHTSAPASALQPHAGSGGVAANDRQVTLGEM 107
L RQGS ++P L +KTV+EVW I P A GG +RQ TLGEM
Sbjct: 94 LQRQGSITMPPELSKKTVDEVWKGIQDVPKRG----------AEEGGRWRRERQPTLGEM 143
Query: 108 TLEDFLVKAGVVRGSFTGQAAMGSGMVNGPVNPMQQGQGGPMMFPVGPVNAXXXXXXXXX 167
TLED F +A + + + P N G +NA
Sbjct: 144 TLED-----------FLVKAGVVTDPNDLPGNMDVVGGAAAAAAGTSDLNAGAQWLQQYH 192
Query: 168 XXXXXXXXXAI--------VPPPPPAQGAMVVVSPGSSDGMSAMTHADMMNCIGNGMMIE 219
+I + P P A V+ P SDG + M+ + + +
Sbjct: 193 QQALEPQHPSIGAPYMATHLAPQPLAVATGAVLDPIYSDGQ---ITSPMLGALSDP---Q 246
Query: 220 NGTRKRPHREDGCAEKTVERRQRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARL 279
RKR + A+K VERRQ+RMIKNRESAARSRARKQAYT ELE ++ L++EN RL
Sbjct: 247 TPGRKRCATGE-IADKLVERRQKRMIKNRESAARSRARKQAYTNELENKVLRLEEENERL 305
Query: 280 KE 281
K+
Sbjct: 306 KK 307
>Os07g0686100 Similar to Abscisic acid responsive elements-binding factor
Length = 274
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 98/223 (43%), Gaps = 67/223 (30%)
Query: 62 QKTVEEVWTEINQAPA--HTSAPASALQPHAGSGGVAANDRQVTLGEMTLEDFLVKAGV- 118
+KTV+EVW +I A H + P +GEMTLEDFL +AGV
Sbjct: 67 RKTVDEVWRDIQGASTGRHHATP---------------------MGEMTLEDFLSRAGVA 105
Query: 119 VRGSFTGQAAMGSGMVNGPVNPMQQGQGGPMMFPVGPVNAXXXXXXXXXXXXXXXXXXAI 178
V G+ +A G+ + G P + + G
Sbjct: 106 VDGA---ASAAGAHWLRGHYPPPPPPTTTTLQYVGGS----------------------- 139
Query: 179 VPPPPPAQGAMVVVSPGSSDGMSAMTHADMMNCIGNGMMIENGTRKRPHREDGCAEKTVE 238
GA+V DG + G RKR DG EKTVE
Sbjct: 140 --------GAVVDGVYNRVDGHGVAGFLSQVGVAG---------RKRGGGVDGVVEKTVE 182
Query: 239 RRQRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARLKE 281
RRQ+RMIKNRESAARSRARKQAYT ELE +++ L++EN RL+E
Sbjct: 183 RRQKRMIKNRESAARSRARKQAYTNELENKISRLEEENQRLRE 225
>Os08g0472000 TRAB1 (BZIP transcription factor)
Length = 318
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Query: 225 RPHREDGCAEKTVERRQRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARLKEAEK 284
R R G EK VERRQRRMIKNRESAARSRARKQAYT+ELEAE+ LK++N L++ ++
Sbjct: 218 RGRRSGGNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQE 277
Query: 285 TVLLTKKQMLVEKMMEQSKEKMNANRGGSQ--LRRSGSCMW 323
++ +K E Q E +N G + LRR+ + W
Sbjct: 278 EIMEMQKNFFPEMQKNQVLEAVNNPYGQKKRCLRRTLTGPW 318
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 2 MNMDEFVANIWNAEEFQATTGGCKGAMEEAKVVXXXXXXXXXXXXXLCRQGSFSLPLPLC 61
MNMDE + +IW AEE QA A L RQGS +LP L
Sbjct: 1 MNMDELLRSIWTAEESQAMASASAAAA--------------AAEGGLQRQGSLTLPRTLS 46
Query: 62 QKTVEEVWTEINQAPAHTSAPASALQPHAGSGGVAANDRQVTLGEMTLEDFLVKAGVVR 120
KTV+EVW ++ + S A+A G G RQ TLGEMTLE+FLV+AGVVR
Sbjct: 47 VKTVDEVWRDLER---EASPGAAAADGGGGGGEQQQPRRQPTLGEMTLEEFLVRAGVVR 102
>Os09g0456200 Similar to BZIP transcription factor ABI5
Length = 376
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 225 RPHREDGCAEKTVERRQRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARLKEAEK 284
R R G EK VERRQRRMIKNRESAARSRARKQAYT+ELEAE+ LK+ N L+ +
Sbjct: 283 RGRRNGGGVEKVVERRQRRMIKNRESAARSRARKQAYTLELEAEVQKLKEMNKELERKQA 342
Query: 285 TVLLTKKQMLVEKMMEQ 301
++ +K VE+M++
Sbjct: 343 DIMEMQKNE-VEEMIKD 358
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 60/122 (49%), Gaps = 19/122 (15%)
Query: 1 SMNMDEFVANIWNAEEFQATTGGCKGAMEEAKVVXXXXXXXXXXXXXLCRQGSFSLPLPL 60
SMNMDE + +IW AEE QA + L RQGS +LP L
Sbjct: 71 SMNMDELLRSIWTAEESQAMA-------SASGSAAGVGVAVGAPPTSLQRQGSLTLPRTL 123
Query: 61 CQKTVEEVWTEI--NQAPAHTSAPASALQPHAGSGGVAANDRQVTLGEMTLEDFLVKAGV 118
KTV+EVW + ++ P +A + P RQ TLGEMTLE+FLV+AGV
Sbjct: 124 SAKTVDEVWRNLVRDEPPPVGAADGGDMPPQ----------RQSTLGEMTLEEFLVRAGV 173
Query: 119 VR 120
VR
Sbjct: 174 VR 175
>Os02g0766700 Similar to Abscisic acid responsive elements-binding factor
(ABA-responsive element binding protein 2) (AREB2)
Length = 357
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 5/112 (4%)
Query: 192 VSPGSSDGMSAMTHADMMNCIGNGM--MIENGTRKRPHREDGCAEKTVERRQRRMIKNRE 249
V P SS+G M D+ + + + + + G R R+ EK VERRQRRMIKNRE
Sbjct: 231 VRPVSSNGFGKMEGGDLSSLSPSPVPYVFKGGLR---GRKAPGIEKVVERRQRRMIKNRE 287
Query: 250 SAARSRARKQAYTVELEAELNYLKQENARLKEAEKTVLLTKKQMLVEKMMEQ 301
SAARSR RKQAY +ELEAE+ LK+ N L++ + +L +K ++E+M Q
Sbjct: 288 SAARSRQRKQAYMMELEAEVAKLKELNDELQKKQDEMLEQQKNEVLERMSRQ 339
>Os03g0322700
Length = 256
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 42/46 (91%)
Query: 235 KTVERRQRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARLK 280
KTVERR++RMIKNRESAARSRARKQAYT ELE +++ L++EN RL+
Sbjct: 163 KTVERRKKRMIKNRESAARSRARKQAYTNELENKISRLEEENKRLR 208
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,868,650
Number of extensions: 453795
Number of successful extensions: 2155
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 2142
Number of HSP's successfully gapped: 14
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)