Os09g0456200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to BZIP transcription factor ABI5.
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Os09g0456200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to BZIP transcription factor ABI5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.31 | 0.589 | 11.9 | -0.488 | 2.71 | -0.911 | 0.765 | -1.89 | -0.149 | 9.79 | 30 | 1094 | -- | -- |
| 157.93 | 0.585 | 11.9 | -0.81 | 2.73 | -1.12 | 0.739 | -- | -0.169 | 9.77 | 30.1 | 1073 | -- | -- |
| 159.52 | 0.588 | 11.9 | -0.49 | 2.7 | -0.916 | -- | -1.66 | -0.151 | 9.78 | 30 | 1094 | -- | -- |
| 159.31 | 0.588 | 12 | -0.796 | 2.72 | -1.1 | -- | -- | -0.235 | 9.79 | 29.73 | 1104 | -- | -- |
| 547.88 | 1.1 | 12.1 | -0.845 | -- | -0.79 | -- | 1.2 | -0.386 | -- | 28.6 | 1495 | -- | -- |
| 208.23 | 0.676 | 12 | -0.504 | 2.54 | -- | 0.442 | -- | -0.309 | 9.65 | -- | -- | -- | -- |
| 208.96 | 0.677 | 12 | -0.488 | 2.53 | -- | -- | -- | -0.308 | 9.64 | -- | -- | -- | -- |
| 546.21 | 1.09 | 12.1 | -0.83 | -- | -0.952 | -- | -- | -0.465 | -- | 28.8 | 5851 | -- | -- |
| 175.31 | 0.617 | 12 | -- | 2.72 | -0.978 | -- | -- | -0.229 | 9.79 | 29.6 | 1107 | -- | -- |
| 589.28 | 1.13 | 12.1 | -0.509 | -- | -- | -- | -- | -0.303 | -- | -- | -- | -- | -- |
| 215.23 | 0.686 | 12 | -- | 2.53 | -- | -- | -- | -0.254 | 9.66 | -- | -- | -- | -- |
| 561.18 | 1.11 | 12 | -- | -- | -0.691 | -- | -- | -0.275 | -- | 28.72 | 5829 | -- | -- |
| 596.12 | 1.14 | 12 | -- | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.21 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 5 | 150.06 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 20 | 152.55 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 30 | 152.99 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 10 |
| 38 | 153.52 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 60 | 154.52 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 71 | 155.02 | humidity | 90 | 720 | < th | dose dependent | sin | 17 | NA |
| 75 | 155.28 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 92 | 155.89 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 94 | 155.94 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 3 |
| 101 | 156.20 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 135 | 156.81 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 159 | 157.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 162 | 157.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 171 | 157.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 190 | 157.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 193 | 157.50 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 194 | 157.50 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 201 | 157.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 217 | 157.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 236 | 157.69 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 6 |
| 272 | 157.87 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 278 | 157.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 282 | 157.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 361 | 158.31 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 372 | 158.33 | humidity | 80 | 720 | > th | dose dependent | rect. | 10 | 12 |
| 520 | 158.83 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 10 |
| 528 | 158.85 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 13 |
| 539 | 158.87 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 9 |
| 560 | 158.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 566 | 158.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 19 |
| 577 | 158.97 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 580 | 158.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 593 | 158.99 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 11 |
| 624 | 159.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 630 | 159.04 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 717 | 159.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 768 | 159.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |