Os06g0211200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Abscisic acid responsive elements-binding factor (ABA-responsive element binding protein 1) (AREB1).
FiT-DB / Search/ Help/ Sample detail
|
Os06g0211200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Abscisic acid responsive elements-binding factor (ABA-responsive element binding protein 1) (AREB1).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.56 | 0.514 | 11 | -1.13 | 0.92 | 1.33 | -0.426 | -1.32 | -0.622 | 22 | 20.15 | 1347 | -- | -- |
| 123.08 | 0.517 | 11 | -0.923 | 0.905 | 1.31 | -0.551 | -- | -0.612 | 21.9 | 20.17 | 1319 | -- | -- |
| 119.96 | 0.51 | 11 | -1.12 | 0.891 | 1.34 | -- | -1.43 | -0.627 | 22.1 | 20.39 | 1323 | -- | -- |
| 123.96 | 0.519 | 11 | -0.946 | 0.904 | 1.26 | -- | -- | -0.569 | 22.1 | 20.49 | 1323 | -- | -- |
| 138.05 | 0.547 | 11 | -1.15 | -- | 2.08 | -- | -1.7 | -0.709 | -- | 10 | 1160 | -- | -- |
| 182.43 | 0.633 | 10.9 | -0.516 | 1.12 | -- | -0.297 | -- | -0.162 | 22.5 | -- | -- | -- | -- |
| 182.78 | 0.633 | 10.9 | -0.505 | 1.12 | -- | -- | -- | -0.161 | 22.5 | -- | -- | -- | -- |
| 142.55 | 0.556 | 11 | -1.01 | -- | 2.01 | -- | -- | -0.68 | -- | 10.28 | 1177 | -- | -- |
| 137.97 | 0.547 | 10.9 | -- | 1.03 | 1.13 | -- | -- | -0.419 | 21.9 | 19.82 | 1340 | -- | -- |
| 259.44 | 0.753 | 10.8 | -0.485 | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
| 189.51 | 0.644 | 10.8 | -- | 1.11 | -- | -- | -- | -0.105 | 22.5 | -- | -- | -- | -- |
| 145 | 0.561 | 10.9 | -- | -- | 2.17 | -- | -- | -0.38 | -- | 4.06 | 1212 | -- | -- |
| 265.66 | 0.761 | 10.8 | -- | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.82 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 2 | 122.24 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 5 | 122.67 | radiation | 20 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 8 | 123.26 | radiation | 20 | 1440 | > th | dose independent | sin | 4 | NA |
| 14 | 123.74 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 31 | 124.01 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 45 | 124.03 | radiation | 20 | 1440 | > th | dose independent | no | NA | NA |
| 138 | 124.09 | radiation | 30 | 1440 | < th | dose dependent | rect. | 13 | 22 |
| 140 | 124.16 | radiation | 20 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 141 | 124.21 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 142 | 124.22 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 149 | 124.35 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 155 | 124.62 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 159 | 124.71 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 197 | 124.86 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 210 | 125.06 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 242 | 125.21 | radiation | 20 | 1440 | < th | dose dependent | sin | 13 | NA |
| 248 | 125.37 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 12 |
| 278 | 125.50 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 305 | 125.61 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |
| 367 | 125.69 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 370 | 125.72 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 374 | 125.74 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 382 | 125.74 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 19 |
| 394 | 125.78 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 400 | 125.80 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 422 | 125.88 | radiation | 40 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 434 | 125.90 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 443 | 125.90 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 458 | 125.92 | radiation | 40 | 1440 | < th | dose dependent | no | NA | NA |
| 496 | 125.95 | radiation | 1 | 1440 | > th | dose dependent | sin | 13 | NA |
| 506 | 125.96 | radiation | 1 | 1440 | > th | dose dependent | sin | 23 | NA |
| 537 | 126.08 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 627 | 126.21 | radiation | 10 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 634 | 126.26 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 817 | 126.56 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 16 |
| 819 | 126.56 | radiation | 40 | 1440 | < th | dose dependent | sin | 0 | NA |
| 846 | 126.71 | humidity | 90 | 720 | < th | dose dependent | sin | 17 | NA |
| 894 | 126.85 | humidity | 90 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 931 | 126.95 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 10 |