Os01g0813100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eukaryotic transcription factor, DNA-binding domain containing protein.
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Os01g0813100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eukaryotic transcription factor, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.4 | 0.365 | 2.82 | 0.347 | 0.177 | -0.277 | -0.106 | 3.92 | 0.216 | 17 | 30.02 | 88 | -- | -- |
| 63.35 | 0.371 | 2.86 | 0.0197 | 0.188 | 0.0903 | 0.113 | -- | 0.187 | 16.7 | 31.51 | 103 | -- | -- |
| 60.43 | 0.362 | 2.82 | 0.344 | 0.178 | -0.278 | -- | 3.85 | 0.215 | 16.8 | 30.03 | 87 | -- | -- |
| 63.19 | 0.37 | 2.86 | 0.0125 | 0.15 | 0.124 | -- | -- | 0.176 | 17 | 29.8 | 141 | -- | -- |
| 61.83 | 0.366 | 2.81 | 0.313 | -- | -0.177 | -- | 3.76 | 0.212 | -- | 30 | 80 | -- | -- |
| 63.5 | 0.374 | 2.86 | 0.0341 | 0.203 | -- | 0.179 | -- | 0.184 | 16.7 | -- | -- | -- | -- |
| 63.57 | 0.373 | 2.86 | 0.0349 | 0.205 | -- | -- | -- | 0.185 | 16.9 | -- | -- | -- | -- |
| 64.23 | 0.373 | 2.86 | 0.00705 | -- | 0.209 | -- | -- | 0.187 | -- | 29.9 | 118 | -- | -- |
| 63.1 | 0.37 | 2.86 | -- | 0.159 | 0.138 | -- | -- | 0.191 | 17.1 | 29.9 | 118 | -- | -- |
| 65.8 | 0.379 | 2.86 | 0.0273 | -- | -- | -- | -- | 0.179 | -- | -- | -- | -- | -- |
| 63.6 | 0.373 | 2.86 | -- | 0.205 | -- | -- | -- | 0.181 | 16.9 | -- | -- | -- | -- |
| 64.22 | 0.373 | 2.85 | -- | -- | 0.223 | -- | -- | 0.193 | -- | 29.96 | 118 | -- | -- |
| 65.82 | 0.379 | 2.86 | -- | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.54 | humidity | 80 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 3 | 57.55 | humidity | 60 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 12 | 57.89 | humidity | 50 | 30 | < th | dose independent | rect. | 15 | 3 |
| 48 | 57.93 | humidity | 50 | 30 | < th | dose dependent | rect. | 15 | 3 |
| 84 | 57.97 | humidity | 50 | 90 | < th | dose independent | rect. | 15 | 1 |
| 87 | 57.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 208 | 58.11 | wind | 1 | 30 | < th | dose independent | rect. | 15 | 1 |
| 212 | 58.11 | wind | 1 | 30 | < th | dose dependent | rect. | 15 | 1 |
| 230 | 58.35 | humidity | 50 | 90 | < th | dose dependent | sin | 12 | NA |
| 233 | 58.40 | temperature | 30 | 30 | > th | dose independent | rect. | 15 | 1 |
| 241 | 58.54 | humidity | 50 | 90 | < th | dose independent | sin | 12 | NA |
| 275 | 58.94 | humidity | 80 | 10 | > th | dose independent | rect. | 10 | 2 |
| 421 | 59.65 | temperature | 30 | 90 | > th | dose independent | sin | 15 | NA |
| 487 | 59.91 | temperature | 30 | 90 | < th | dose independent | sin | 20 | NA |
| 543 | 60.02 | temperature | 30 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 588 | 60.10 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 610 | 60.17 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 15 | 1 |
| 614 | 60.18 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 15 | 1 |
| 617 | 60.19 | temperature | 30 | 90 | > th | dose independent | rect. | 17 | 23 |
| 756 | 60.44 | humidity | 50 | 270 | < th | dose independent | rect. | 12 | 3 |
| 778 | 60.48 | temperature | 30 | 90 | > th | dose independent | no | NA | NA |
| 931 | 60.55 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 1 |
| 949 | 60.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 951 | 60.56 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 953 | 60.57 | temperature | 30 | 90 | < th | dose independent | no | NA | NA |
| 956 | 60.58 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 4 |
| 967 | 60.62 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 983 | 60.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 7 |