BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0847300 Os01g0847300|AK071164
(153 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0847300 Protein of unknown function DUF588 family protein 276 4e-75
Os05g0456500 Protein of unknown function DUF588 family protein 199 5e-52
Os09g0249400 Protein of unknown function DUF588 family protein 196 5e-51
Os03g0206600 Protein of unknown function DUF588 family protein 103 4e-23
Os10g0343200 Protein of unknown function DUF588 family protein 94 5e-20
Os03g0767900 Protein of unknown function DUF588 family protein 75 2e-14
>Os01g0847300 Protein of unknown function DUF588 family protein
Length = 153
Score = 276 bits (706), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 142/153 (92%), Positives = 142/153 (92%)
Query: 1 MRELAGSPGTWSGLSLRVGQLVFXXXXXXXXXXXLGFAAYTAFCYLIASMGLQALWSLGL 60
MRELAGSPGTWSGLSLRVGQLVF LGFAAYTAFCYLIASMGLQALWSLGL
Sbjct: 1 MRELAGSPGTWSGLSLRVGQLVFAAASVCATASALGFAAYTAFCYLIASMGLQALWSLGL 60
Query: 61 ACLDCYALKFKKDLHSAVLLSLFVVGDWVTAILSFAASCSAAGVVVLFDRDIYACRNPQL 120
ACLDCYALKFKKDLHSAVLLSLFVVGDWVTAILSFAASCSAAGVVVLFDRDIYACRNPQL
Sbjct: 61 ACLDCYALKFKKDLHSAVLLSLFVVGDWVTAILSFAASCSAAGVVVLFDRDIYACRNPQL 120
Query: 121 PCGRFELAIACAFLSWAFSATSALVMFWLLASL 153
PCGRFELAIACAFLSWAFSATSALVMFWLLASL
Sbjct: 121 PCGRFELAIACAFLSWAFSATSALVMFWLLASL 153
>Os05g0456500 Protein of unknown function DUF588 family protein
Length = 155
Score = 199 bits (507), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 102/146 (69%), Positives = 119/146 (81%), Gaps = 1/146 (0%)
Query: 8 PGTWSGLSLRVGQLVFXXXXXXXXXXXLGFAAYTAFCYLIASMGLQALWSLGLACLDCYA 67
PGTW GL++RVGQ+ F GFA YTAFCYLIASMGLQ+LWSLGLACLD YA
Sbjct: 9 PGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYA 68
Query: 68 LKFKKDLHSAVLLSLFVVGDWVTAILSFAASCSAAGVVVLFDRDIYACRN-PQLPCGRFE 126
L K+DL++A+L+SLFV+GDWVTA+LSFAASCSA GV+VLF RD+ CR PQLPCGRFE
Sbjct: 69 LTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRFE 128
Query: 127 LAIACAFLSWAFSATSALVMFWLLAS 152
LA+A AFLSWA SATSA++MF LLA+
Sbjct: 129 LAVALAFLSWALSATSAIIMFCLLAA 154
>Os09g0249400 Protein of unknown function DUF588 family protein
Length = 154
Score = 196 bits (499), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 123/154 (79%), Gaps = 1/154 (0%)
Query: 1 MRELAGSPGTWSGLSLRVGQLVFXXXXXXXXXXXLGFAAYTAFCYLIASMGLQALWSLGL 60
M+++ GSPGTWSG+SLRV Q VF GF+ YTAFCYLIASMGLQ LWS GL
Sbjct: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
Query: 61 ACLDCYALKFKKDLHSAVLLSLFVVGDWVTAILSFAASCSAAGVVVLFDRDIYACR-NPQ 119
ACLD Y+L+ K+DLH+ VL+SLFVVGDWVTAILSFAA+ ++AGV +LF+RD++ CR PQ
Sbjct: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFAAASASAGVTILFERDVHFCRMYPQ 120
Query: 120 LPCGRFELAIACAFLSWAFSATSALVMFWLLASL 153
L CGR+EL++ AF++W+F ATSA+ MFWLLASL
Sbjct: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLLASL 154
>Os03g0206600 Protein of unknown function DUF588 family protein
Length = 178
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 1 MRELAGSPGTWSGLSLRVGQLVFXXXXXXXXXXXLGFAAYTAFCYLIASMGLQALWSLGL 60
M++L G PGT GL LR+ Q F F + T+FC+L+A+ LQ LWS L
Sbjct: 28 MKDLPGMPGTAGGLGLRLAQFAFAAVALAVMASTNDFPSVTSFCFLVAAAILQCLWSFSL 87
Query: 61 ACLDCYALKFKKDLHSAVLLSLFVVGDWVTAILSFAASCSAAGVVVLFDRDIYACRNPQL 120
A +D YAL K+ L + + LF +GD +TA L+F+A+C+++G+ VL D D+ C
Sbjct: 88 AIVDIYALLVKRCLRNRRAVCLFAIGDGITAALTFSAACASSGITVLIDNDLDLCSENH- 146
Query: 121 PCGRFELAIACAFLSWAFSATSALVMFWLLAS 152
C FE A A AFLSW + S L+ FW +AS
Sbjct: 147 -CASFESATAMAFLSWFALSPSFLLNFWSMAS 177
>Os10g0343200 Protein of unknown function DUF588 family protein
Length = 203
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 37 FAAYTAFCYLIASMGLQALWSLGLACLDCYALKFKKDLHSAVLLSLFVVGDWVTAILSFA 96
F + +AFCYL+A+ LQ LWSL LA +D YAL K+ L + + +F +GD +T L+
Sbjct: 89 FPSVSAFCYLVAAAILQCLWSLSLAVVDIYALLVKRSLRNPQAVCIFTIGDGITGTLTLG 148
Query: 97 ASCSAAGVVVLFDRDIYACRNPQLPCGRFELAIACAFLSWAFSATSALVMFWLLAS 152
A+C++AG+ VL D+ C N C FE A A AF+SW A S ++ FW +AS
Sbjct: 149 AACASAGITVLIGNDLNICANNH--CASFETATAMAFISWFALAPSCVLNFWSMAS 202
>Os03g0767900 Protein of unknown function DUF588 family protein
Length = 156
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 14 LSLRVGQLVFXXXXXXXXXXXLGFAAYTAFCYLIASMGLQALWSLGLACLDCYALKFKKD 73
L LRVGQ VF + F +YTAFC+L+ MGL WS LA +D Y++
Sbjct: 18 LGLRVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPWSCTLAMIDVYSILVGCP 77
Query: 74 LHSAVLLSLFVVGDWVTAILSFAASCSAAGVVVLFDRDIYACRNPQLPCGRFELAIACAF 133
L ++ + V+GDWV AILS AA+ S+A V+ L + + +P+ CGR++L+ AF
Sbjct: 78 LRVPGVMVIVVIGDWVLAILSLAAASSSAAVIDLLLQFHGSHCSPRF-CGRYQLSAMMAF 136
Query: 134 LSWAFSATSALVMFWLLAS 152
LSW +A S+L W +AS
Sbjct: 137 LSWFLTAASSLFNLWFIAS 155
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.331 0.139 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,587,841
Number of extensions: 144622
Number of successful extensions: 381
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 6
Length of query: 153
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 61
Effective length of database: 12,232,113
Effective search space: 746158893
Effective search space used: 746158893
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 151 (62.8 bits)