BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0833100 Os01g0833100|AK068946
(312 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0833100 NLI interacting factor domain containing protein 537 e-153
Os01g0629400 NLI interacting factor domain containing protein 84 1e-16
Os05g0466800 Conserved hypothetical protein 83 2e-16
Os01g0665300 NLI interacting factor domain containing protein 83 3e-16
Os03g0850100 NLI interacting factor domain containing protein 82 7e-16
Os05g0205100 NLI interacting factor domain containing protein 75 4e-14
>Os01g0833100 NLI interacting factor domain containing protein
Length = 312
Score = 537 bits (1384), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/312 (85%), Positives = 266/312 (85%)
Query: 1 MAAAEVYSPTXXXXXXXXXXXXXXXXXXXXXXGWIGFLLQVLLQILRGTPSCAQLLSFVG 60
MAAAEVYSPT GWIGFLLQVLLQILRGTPSCAQLLSFVG
Sbjct: 1 MAAAEVYSPTAAAAAQQQQRGKVAAQAWQAVVGWIGFLLQVLLQILRGTPSCAQLLSFVG 60
Query: 61 FRYPLLSGPADSEQSPSVAFMPLRSEIXXXXXXXXXXXXESLQRXXXXXXXXXXXXSAYE 120
FRYPLLSGPADSEQSPSVAFMPLRSEI ESLQR SAYE
Sbjct: 61 FRYPLLSGPADSEQSPSVAFMPLRSEIPADTAPAPTPPPESLQRLTVVLDLDETLVSAYE 120
Query: 121 SSSLPAIVRTQAVEAGLHCFDMECISTEKDVEGRNKVNHVTVFERPGLHEFLQKTSEFAD 180
SSSLPAIVRTQAVEAGLHCFDMECISTEKDVEGRNKVNHVTVFERPGLHEFLQKTSEFAD
Sbjct: 121 SSSLPAIVRTQAVEAGLHCFDMECISTEKDVEGRNKVNHVTVFERPGLHEFLQKTSEFAD 180
Query: 181 LILFTAGLEGYARPLVDRIDVHNRFKLRLYRPSTVTTEYREHVKDLSCVSKDFCRVVIVD 240
LILFTAGLEGYARPLVDRIDVHNRFKLRLYRPSTVTTEYREHVKDLSCVSKDFCRVVIVD
Sbjct: 181 LILFTAGLEGYARPLVDRIDVHNRFKLRLYRPSTVTTEYREHVKDLSCVSKDFCRVVIVD 240
Query: 241 NNPFSFILQPLNGIPCVPFSAGQHNDNQLMEVIFPLLKHLSIQRDVRPALYERFHMPEWF 300
NNPFSFILQPLNGIPCVPFSAGQHNDNQLMEVIFPLLKHLSIQRDVRPALYERFHMPEWF
Sbjct: 241 NNPFSFILQPLNGIPCVPFSAGQHNDNQLMEVIFPLLKHLSIQRDVRPALYERFHMPEWF 300
Query: 301 QKHGIPQTDQAV 312
QKHGIPQTDQAV
Sbjct: 301 QKHGIPQTDQAV 312
>Os01g0629400 NLI interacting factor domain containing protein
Length = 177
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 155 NKVNH-VTVFERPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRIDVHNRF-KLRLYRP 212
N NH V V +RP L FL+K ++ DL++FTA YA L+DR+D R R+YR
Sbjct: 32 NMKNHTVYVRQRPHLKMFLEKVAQMFDLVIFTASQRIYAEQLIDRLDPDGRLISHRIYRE 91
Query: 213 STVTTEYREHVKDLSCVSKDFCRVVIVDNNPFSFILQPLNGIPCVPFSAGQHNDNQLMEV 272
S + +E + KDL+ + D +VVIVDN P F LQ NGIP + +D +L+E+
Sbjct: 92 SCIFSE-GCYTKDLTILGVDLAKVVIVDNTPQVFQLQVDNGIPIKSW-FDDPSDQELVEL 149
Query: 273 IFPLLKHLSIQRDVRPALYERFH 295
+ P L+ L DVRP + + FH
Sbjct: 150 L-PFLETLVGVEDVRPIISKTFH 171
>Os05g0466800 Conserved hypothetical protein
Length = 44
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 269 LMEVIFPLLKHLSIQRDVRPALYERFHMPEWFQKHGIPQTDQA 311
LM VIFPLLKHLS+Q DVRPALYE FHMPEWFQ+HGIPQ DQA
Sbjct: 1 LMGVIFPLLKHLSLQNDVRPALYETFHMPEWFQRHGIPQIDQA 43
>Os01g0665300 NLI interacting factor domain containing protein
Length = 439
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 156 KVNHVTVFERPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRIDVHNR-FKLRLYRPST 214
K + V V +RP LH FLQK +E ++++FTA YA L+D +D + F R +R S
Sbjct: 292 KEHMVYVRKRPHLHMFLQKMAEMFEVVIFTASQSVYADQLLDILDPEKKLFSRRYFRESC 351
Query: 215 VTTEYREHVKDLSCVSKDFCRVVIVDNNPFSFILQPLNGIPCVPFSAGQHNDNQLMEVIF 274
V T + KDL+ V D +VVI+DN P F LQ NGIP + + + ++ + +
Sbjct: 352 VFTN-TSYTKDLTVVGVDLAKVVIIDNTPQVFQLQVNNGIPIESWFSD--DSDEALPQLI 408
Query: 275 PLLKHLSIQRDVRPALYERF 294
P L+ L+ DVRP + ++F
Sbjct: 409 PFLETLASADDVRPIIAKKF 428
>Os03g0850100 NLI interacting factor domain containing protein
Length = 444
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
Query: 165 RPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRIDVHNR-FKLRLYRPSTVTTEYREHV 223
RP L EFL+ + ++I+FTA YA L++ +D R F+ R+YR S + E ++
Sbjct: 301 RPYLKEFLETVASMFEIIIFTASQSIYAEQLLNILDPKRRLFRHRVYRESCLFVE-GNYL 359
Query: 224 KDLSCVSKDFCRVVIVDNNPFSFILQPLNGIPCVPFSAGQHNDNQLMEVIFPLLKHLSIQ 283
KDLS + +D RVVIVDN+P +F Q NG+P + ND +L+ + P L+ L
Sbjct: 360 KDLSVLGRDLARVVIVDNSPQAFGFQLDNGVPIESW-FDDRNDRELL-TLLPFLQSLVGV 417
Query: 284 RDVRPALYERFHMPE 298
DVRP + +F++ E
Sbjct: 418 EDVRPCIARKFNLRE 432
>Os05g0205100 NLI interacting factor domain containing protein
Length = 307
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 162 VFERPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRIDVHNR-FKLRLYRPSTVTTEYR 220
V +RPG+ FL + +L++FTAGL YA ++DR+D F RLYR +
Sbjct: 170 VVKRPGVDAFLAAAAAAFELVVFTAGLPEYASLVLDRLDPRGALFAHRLYRGACRDAGDG 229
Query: 221 EHVKDLSCVSKDFCRVVIVDNNPFSFILQPLNGIPCVPFSAGQHNDNQLMEVIFPLLKHL 280
VKDL+ +D R VIVD+NP ++ LQP N +P PF D+ +E + +L
Sbjct: 230 RLVKDLAATGRDLRRAVIVDDNPNAYSLQPDNAVPVAPFI--DDADDHELERVMGILSIA 287
Query: 281 SIQRDVRPAL 290
+ DVR A+
Sbjct: 288 AEFDDVRDAI 297
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,690,185
Number of extensions: 312670
Number of successful extensions: 486
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 6
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)