Os05g0466800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0466800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.82 | 0.181 | 11.3 | -0.402 | 0.213 | 0.48 | 0.863 | -1.64 | 0.153 | 1.27 | 27.88 | 5580 | -- | -- |
| 15.72 | 0.185 | 11.3 | -0.0187 | 0.207 | 0.301 | 0.879 | -- | 0.0811 | 1.06 | 25.64 | 8439 | -- | -- |
| 17.63 | 0.196 | 11.3 | -0.397 | 0.233 | 0.474 | -- | -1.49 | 0.152 | 2.21 | 28.01 | 5624 | -- | -- |
| 18.09 | 0.198 | 11.3 | -0.0606 | 0.231 | 0.303 | -- | -- | 0.127 | 2.58 | 25.89 | 6935 | -- | -- |
| 20.53 | 0.211 | 11.3 | -0.372 | -- | 0.499 | -- | -1.47 | 0.189 | -- | 28.28 | 5536 | -- | -- |
| 19.41 | 0.207 | 11.3 | 0.0988 | 0.239 | -- | 0.909 | -- | 0.209 | 1.4 | -- | -- | -- | -- |
| 22.48 | 0.222 | 11.3 | 0.0666 | 0.254 | -- | -- | -- | 0.203 | 2.52 | -- | -- | -- | -- |
| 20.95 | 0.213 | 11.3 | -0.0457 | -- | 0.346 | -- | -- | 0.134 | -- | 25.47 | 6891 | -- | -- |
| 18.15 | 0.198 | 11.3 | -- | 0.223 | 0.299 | -- | -- | 0.141 | 2.57 | 26.21 | 6935 | -- | -- |
| 26.27 | 0.24 | 11.3 | 0.0773 | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
| 22.6 | 0.222 | 11.3 | -- | 0.255 | -- | -- | -- | 0.195 | 2.52 | -- | -- | -- | -- |
| 21.03 | 0.214 | 11.3 | -- | -- | 0.331 | -- | -- | 0.137 | -- | 25.59 | 6905 | -- | -- |
| 26.43 | 0.24 | 11.3 | -- | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 10 |
| 8 | 14.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 13 | 14.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 22 | 14.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 7 |
| 31 | 14.98 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 6 |
| 58 | 15.05 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 72 | 15.07 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 114 | 15.16 | temperature | 25 | 4320 | > th | dose independent | sin | 9 | NA |
| 115 | 15.16 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 116 | 15.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 125 | 15.17 | temperature | 25 | 4320 | < th | dose independent | sin | 9 | NA |
| 126 | 15.17 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 131 | 15.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 136 | 15.19 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 148 | 15.21 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 11 |
| 205 | 15.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 11 |
| 211 | 15.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 212 | 15.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 265 | 15.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 287 | 15.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 352 | 15.37 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 6 |
| 353 | 15.37 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 7 |
| 383 | 15.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 19 |
| 432 | 15.39 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 459 | 15.40 | temperature | 30 | 4320 | < th | dose independent | sin | 16 | NA |
| 497 | 15.41 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 525 | 15.41 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 534 | 15.42 | temperature | 30 | 4320 | > th | dose independent | sin | 17 | NA |
| 601 | 15.43 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 17 |
| 606 | 15.43 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 19 |
| 694 | 15.45 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 814 | 15.45 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 824 | 15.46 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 956 | 15.46 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 964 | 15.46 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 967 | 15.46 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 975 | 15.46 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 23 |