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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0850100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NLI interacting factor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.95 (0.0375) R2 : 0.203
β1 : -0.848 (0.137) R2dD : 0.0693 R2D : 0.0351
β2 : 0.673 (0.0907) R2dC : 0.0963 R2C : 0.0873
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.436 (0.08) R2dN8 : 0.0697 R2N8 : 0.0338
σ : 0.705
deviance : 226.37
__
_____
C
peak time of C : 13.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
202.1 0.668 5.85 -0.151 0.685 0.158 0.919 -4.45 -0.238 13.9 0.8107 1389 -- --
209.78 0.675 5.92 -0.465 0.475 1.27 0.429 -- -0.281 14.3 0.09756 1379 -- --
203.26 0.664 5.85 -0.138 0.683 0.131 -- -4.43 -0.25 13.9 0.7357 1445 -- --
209.71 0.674 5.92 -0.499 0.56 1.24 -- -- -0.303 14.7 0.1178 1382 -- --
226.03 0.7 5.84 -0.3 -- 1.23 -- -1.95 -0.208 -- 0.5111 1345 -- --
225.44 0.704 5.95 -0.863 0.672 -- 0.49 -- -0.439 13.9 -- -- -- --
226.37 0.705 5.95 -0.848 0.673 -- -- -- -0.436 13.9 -- -- -- --
225.72 0.7 5.93 -0.48 -- 1.51 -- -- -0.307 -- 0.1645 1348 -- --
215.36 0.683 5.92 -- 0.55 1.51 -- -- -0.242 14.9 0.1174 1382 -- --
253.68 0.744 5.95 -0.876 -- -- -- -- -0.452 -- -- -- -- --
245.31 0.733 5.93 -- 0.688 -- -- -- -0.342 14 -- -- -- --
230.74 0.707 5.91 -- -- 1.77 -- -- -0.236 -- 0.11 1357 -- --
273.9 0.772 5.93 -- -- -- -- -- -0.355 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.68 radiation 1 1440 < th dose dependent rect. 8 22
5 201.23 radiation 1 1440 < th dose dependent rect. 18 22
6 201.48 radiation 1 1440 < th dose dependent rect. 12 18
12 202.05 humidity 90 720 > th dose dependent rect. 7 18
13 202.10 radiation 1 1440 < th dose dependent sin 23 NA
18 202.22 radiation 1 1440 < th dose dependent rect. 7 12
39 202.28 radiation 1 1440 > th dose independent rect. 8 9
41 202.32 radiation 1 1440 < th dose independent rect. 8 9
44 202.37 radiation 1 1440 < th dose dependent rect. 7 9
51 202.43 humidity 80 1440 > th dose dependent rect. 11 2
57 202.48 radiation 1 1440 < th dose dependent rect. 2 14
59 202.49 radiation 1 1440 < th dose dependent rect. 4 12
63 202.52 radiation 1 1440 < th dose dependent rect. 21 19
71 202.62 radiation 1 1440 < th dose dependent rect. 10 6
85 202.88 radiation 1 1440 < th dose dependent rect. 13 3
90 202.90 humidity 80 1440 > th dose independent rect. 11 2
110 202.99 humidity 90 720 > th dose dependent sin 18 NA
111 203.02 radiation 1 1440 < th dose independent rect. 8 22
120 203.03 radiation 1 1440 < th dose dependent rect. 24 22
121 203.04 radiation 1 1440 > th dose independent rect. 8 22
136 203.05 radiation 1 1440 < th dose dependent no NA NA
147 203.05 radiation 1 1440 < th dose dependent rect. 4 23
170 203.13 radiation 1 1440 < th dose dependent rect. 12 23
174 203.23 humidity 80 1440 < th dose independent rect. 11 2
175 203.23 radiation 1 1440 < th dose dependent rect. 12 7
185 203.27 radiation 1 1440 < th dose dependent rect. 12 13
233 203.61 radiation 40 10 < th dose independent rect. 3 23
235 203.65 radiation 1 1440 > th dose independent rect. 13 4
236 203.68 radiation 1 1440 < th dose independent rect. 13 4
264 203.79 radiation 1 1440 < th dose independent rect. 10 1
266 203.79 radiation 1 1440 < th dose dependent rect. 10 1
272 203.84 radiation 1 1440 < th dose independent rect. 14 1
273 203.84 radiation 1 1440 < th dose dependent rect. 14 1
276 203.87 wind 9 43200 < th dose independent rect. 19 2
282 203.93 humidity 50 14400 < th dose dependent rect. 16 1
291 204.03 radiation 1 1440 > th dose independent rect. 13 2
304 204.11 wind 9 43200 > th dose independent rect. 19 2
311 204.13 radiation 1 1440 < th dose independent rect. 12 18
323 204.18 radiation 1 1440 > th dose independent rect. 12 18
338 204.22 radiation 1 1440 < th dose independent rect. 8 19
364 204.40 radiation 40 10 > th dose independent rect. 13 23
432 204.60 radiation 40 10 < th dose independent sin 1 NA
439 204.68 radiation 1 1440 < th dose independent sin 22 NA
441 204.70 radiation 1 1440 > th dose independent sin 22 NA
448 204.77 wind 9 43200 < th dose independent rect. 19 4
461 204.90 wind 5 43200 < th dose independent rect. 21 1
509 205.19 radiation 40 10 > th dose independent no NA NA
511 205.19 radiation 40 10 > th dose independent rect. 9 6
695 205.19 wind 9 43200 > th dose dependent rect. 19 4
698 205.22 wind 5 43200 > th dose independent rect. 21 1
701 205.27 radiation 40 10 > th dose independent rect. 11 23
706 205.32 radiation 40 10 < th dose independent no NA NA
707 205.32 radiation 1 1440 < th dose independent rect. 18 22
708 205.33 radiation 1 1440 > th dose independent rect. 18 22
709 205.33 radiation 40 10 < th dose independent rect. 13 23
712 205.35 radiation 40 10 > th dose independent sin 1 NA
723 205.46 humidity 80 1440 > th dose independent rect. 9 6
742 205.58 radiation 1 1440 < th dose independent rect. 12 15
749 205.59 radiation 1 1440 < th dose independent rect. 12 10
758 205.60 radiation 1 1440 < th dose independent rect. 12 13
783 205.62 wind 9 43200 > th dose dependent rect. 17 6
795 205.67 wind 7 43200 > th dose dependent rect. 19 2
830 205.83 radiation 1 1440 < th dose independent rect. 5 11
833 205.85 radiation 1 1440 > th dose independent rect. 5 11
838 205.91 radiation 1 1440 < th dose independent rect. 2 14
882 206.00 wind 9 43200 > th dose independent rect. 17 4
906 206.06 wind 9 43200 > th dose dependent rect. 17 13
914 206.10 wind 9 43200 < th dose independent rect. 17 4
916 206.10 wind 9 43200 < th dose independent rect. 17 6
920 206.13 radiation 1 1440 > th dose independent rect. 10 2
938 206.15 radiation 40 10 < th dose independent rect. 17 23
946 206.16 radiation 40 10 < th dose independent rect. 21 23
954 206.20 wind 9 43200 > th dose independent rect. 17 6
996 206.30 wind 9 43200 < th dose independent rect. 17 13