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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0205100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NLI interacting factor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : -1.62 (3.59) R2 : 0.114
β1 : 20.9 (15.3) R2dD : 33.7 R2D : -63.3
β2 : -- (--) R2dC : -- R2C : --
β3 : -1090 (818) R2dE : 6690 R2E : -6770
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4670 (3490) R2dD*E : 6740 R2D*E : -6670
γ1 : 0.26 (0.0941) R2dN8 : 0.0198 R2N8 : -30
σ : 0.824
deviance : 313.07
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 80.03
memory length : 262
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.0115
open length of G : 0.987

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
307.13 0.823 -1.6 20.8 0.294 -1090 0.532 4660 0.262 21.2 80.04 270 0.00683 0.997
983012.18 46.2 2.16 9.16 3.47 -989 3.24 -- 4.03 5.4 82.24 92 0.644 0.97
308.06 0.817 -1.6 20.8 0.298 -1090 -- 4660 0.262 20.7 80.03 267 0.00311 1
404926.63 29.6 2.64 -28.4 5.82 -609 -- -- -7.02 0.725 74.08 98 0.931 1.76
313.07 0.824 -1.62 20.9 -- -1090 -- 4670 0.26 -- 80.03 262 0.0115 0.987
339 0.863 3.19 0.443 0.286 -- 0.604 -- 0.249 22.1 -- -- -- --
340.3 0.864 3.19 0.422 0.291 -- -- -- 0.249 21.4 -- -- -- --
285847.95 24.9 5.14 -42.1 -- -504 -- -- -13.3 -- 76.95 144 4.44 1.71
246856.53 23.1 2.02 -- 6.94 -490 -- -- -0.328 7.88 74.45 156 0.906 2.03
345.27 0.868 3.18 0.423 -- -- -- -- 0.248 -- -- -- -- --
344.99 0.869 3.2 -- 0.292 -- -- -- 0.202 21.5 -- -- -- --
333.26 0.853 3.19 -- -- 4.1 -- -- 0.213 -- 75 124 1.35 1.15
350 0.873 3.19 -- -- -- -- -- 0.201 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 307.74 humidity 80.0 270 < th dose independent rect. 24 1
2 307.74 humidity 80.0 10 < th dose independent rect. 24 5
4 307.74 humidity 80.0 270 < th dose dependent rect. 24 1
10 308.21 humidity 80.0 90 < th dose dependent rect. 1 3
13 308.38 humidity 80.0 10 < th dose dependent rect. 24 5
28 310.65 temperature 20.0 270 < th dose dependent rect. 24 1
91 318.97 temperature 20.0 270 < th dose independent rect. 24 1
101 319.96 temperature 20.0 90 < th dose dependent rect. 24 4
151 322.28 temperature 20.0 90 < th dose dependent rect. 2 1
231 324.60 temperature 25.0 720 > th dose independent rect. 8 1
240 324.94 humidity 80.0 90 < th dose independent rect. 24 9
242 325.00 temperature 25.0 720 > th dose dependent rect. 8 1
264 325.55 wind 5.0 720 < th dose independent rect. 19 11
268 325.58 wind 9.0 14400 > th dose independent rect. 4 8
269 325.59 wind 9.0 4320 > th dose independent rect. 18 2
274 325.77 temperature 25.0 720 > th dose dependent rect. 2 7
276 325.81 humidity 70.0 720 > th dose independent rect. 19 2
279 325.82 wind 9.0 14400 < th dose independent rect. 2 10
280 325.82 humidity 60.0 90 < th dose dependent rect. 9 1
301 325.87 wind 7.0 10 < th dose independent rect. 8 12
306 325.92 temperature 20.0 90 < th dose independent rect. 24 4
312 326.01 wind 3.0 1440 < th dose independent rect. 9 3
317 326.11 wind 3.0 1440 < th dose independent rect. 11 1
323 326.15 wind 3.0 1440 > th dose independent rect. 9 3
326 326.23 humidity 60.0 90 < th dose independent rect. 9 1
328 326.24 wind 3.0 1440 > th dose independent rect. 11 1
347 326.36 temperature 20.0 720 > th dose independent rect. 9 7
348 326.37 radiation 40.0 43200 < th dose independent rect. 10 1
357 326.50 humidity 80.0 1440 < th dose independent rect. 21 5
358 326.50 wind 9.0 720 < th dose independent rect. 16 17
368 326.58 wind 5.0 720 > th dose dependent rect. 22 1
370 326.59 temperature 10.0 720 > th dose dependent rect. 8 1
372 326.61 temperature 25.0 90 > th dose dependent rect. 8 1
379 326.76 humidity 80.0 270 > th dose independent rect. 19 10
383 326.81 humidity 80.0 720 < th dose independent rect. 8 1
384 326.81 wind 9.0 14400 > th dose independent rect. 10 2
390 326.90 wind 9.0 14400 < th dose independent rect. 7 5
404 327.01 wind 5.0 1440 < th dose dependent rect. 11 1
408 327.07 radiation 40.0 43200 > th dose independent rect. 10 1
422 327.19 wind 3.0 30 > th dose independent rect. 8 1
426 327.26 wind 7.0 14400 > th dose dependent rect. 11 1
435 327.30 humidity 80.0 1440 > th dose independent rect. 21 5
436 327.32 wind 1.0 30 > th dose dependent rect. 8 1
441 327.34 atmosphere 995.0 30 > th dose independent rect. 9 23
447 327.38 humidity 80.0 10 < th dose independent rect. 18 11
449 327.40 temperature 10.0 1440 > th dose independent rect. 9 1
452 327.40 atmosphere 995.0 1440 > th dose independent rect. 9 1
455 327.40 atmosphere 1015.0 1440 < th dose independent rect. 9 1
457 327.40 radiation 40.0 43200 < th dose independent rect. 15 21
458 327.40 temperature 10.0 1440 > th dose independent rect. 10 23
479 327.52 temperature 25.0 30 > th dose independent rect. 8 1
480 327.53 humidity 80.0 30 < th dose independent rect. 8 1
485 327.55 wind 9.0 720 < th dose independent rect. 21 22
488 327.57 wind 9.0 4320 > th dose dependent rect. 18 2
489 327.59 humidity 50.0 4320 > th dose independent rect. 9 1
492 327.60 radiation 20.0 30 > th dose independent rect. 8 1
498 327.63 humidity 90.0 30 < th dose dependent rect. 8 1
502 327.65 wind 5.0 720 < th dose independent rect. 21 9
506 327.66 wind 5.0 720 > th dose independent rect. 19 8
511 327.68 radiation 40.0 43200 < th dose independent rect. 7 5
528 327.71 humidity 80.0 1440 > th dose independent rect. 24 1
540 327.74 temperature 10.0 10 > th dose dependent rect. 8 12
544 327.76 temperature 20.0 720 > th dose independent rect. 19 2
562 327.78 wind 9.0 43200 < th dose independent rect. 13 1
574 327.87 radiation 40.0 43200 < th dose independent sin 10 NA
580 327.88 radiation 10.0 30 > th dose dependent rect. 8 1
588 327.90 wind 7.0 14400 > th dose dependent rect. 4 8
592 327.91 radiation 30.0 43200 > th dose dependent rect. 10 1
594 327.93 temperature 30.0 90 < th dose independent rect. 9 23
600 327.96 wind 9.0 43200 > th dose dependent rect. 13 1
607 327.98 atmosphere 1005.0 30 > th dose dependent rect. 8 1
611 328.00 wind 9.0 14400 < th dose independent sin 7 NA
616 328.01 wind 5.0 720 < th dose independent rect. 16 1
618 328.02 atmosphere 1005.0 30 > th dose independent rect. 8 1
627 328.05 wind 9.0 43200 > th dose independent rect. 13 1
628 328.05 radiation 40.0 30 < th dose independent rect. 8 1
634 328.05 wind 3.0 1440 < th dose dependent rect. 9 2
643 328.08 humidity 70.0 30 > th dose independent rect. 8 1
660 328.13 wind 5.0 30 < th dose independent rect. 8 1
663 328.13 temperature 10.0 30 > th dose independent rect. 8 1
665 328.13 temperature 30.0 30 < th dose independent rect. 8 1
666 328.13 humidity 50.0 30 > th dose independent rect. 8 1
668 328.13 atmosphere 995.0 30 > th dose independent rect. 8 1
669 328.13 atmosphere 1010.0 30 < th dose independent rect. 8 1
672 328.13 precipitation 0.1 30 < th dose independent rect. 8 1
673 328.13 temperature 10.0 30 > th dose independent rect. 9 23
674 328.13 precipitation 0.1 30 < th dose dependent rect. 8 1
675 328.13 wind 9.0 43200 > th dose dependent rect. 12 3
676 328.13 wind 5.0 720 > th dose dependent rect. 19 8
678 328.15 wind 5.0 720 < th dose independent rect. 18 7
682 328.17 wind 9.0 14400 > th dose independent sin 7 NA
701 328.25 humidity 80.0 270 < th dose independent sin 12 NA
707 328.25 precipitation 0.1 720 < th dose independent rect. 21 22
709 328.25 precipitation 0.1 720 < th dose dependent rect. 21 22
728 328.30 radiation 1.0 720 < th dose dependent rect. 4 17
729 328.31 wind 5.0 720 < th dose independent rect. 19 2
730 328.31 temperature 30.0 720 < th dose independent rect. 18 3
764 328.36 radiation 40.0 30 < th dose dependent rect. 8 1
767 328.37 wind 9.0 30 < th dose dependent rect. 8 1
770 328.38 atmosphere 1015.0 30 < th dose dependent rect. 8 1
775 328.40 temperature 25.0 4320 > th dose dependent rect. 8 1
780 328.43 temperature 20.0 10 < th dose dependent rect. 1 15
784 328.44 humidity 50.0 30 > th dose dependent rect. 8 1
785 328.44 wind 3.0 720 > th dose dependent rect. 16 11
789 328.45 temperature 30.0 1440 < th dose independent rect. 1 8
795 328.46 wind 5.0 720 > th dose dependent rect. 19 6
802 328.48 wind 5.0 720 > th dose independent rect. 22 1
806 328.48 wind 5.0 720 > th dose independent rect. 21 6
834 328.52 radiation 20.0 43200 < th dose independent rect. 15 5
837 328.52 radiation 20.0 43200 < th dose independent rect. 15 13
843 328.53 radiation 20.0 43200 < th dose independent rect. 15 2
862 328.55 humidity 50.0 720 > th dose dependent rect. 19 2
872 328.61 wind 5.0 720 > th dose independent rect. 21 4
874 328.61 temperature 25.0 4320 > th dose dependent rect. 2 8
875 328.61 radiation 30.0 43200 > th dose dependent rect. 16 20
879 328.62 radiation 30.0 43200 > th dose dependent rect. 7 5
920 328.68 wind 9.0 43200 > th dose independent rect. 10 6
927 328.69 wind 9.0 720 < th dose independent rect. 21 7
958 328.71 wind 9.0 43200 > th dose independent rect. 13 3
965 328.71 temperature 10.0 10 > th dose dependent rect. 20 12
972 328.75 wind 1.0 43200 > th dose independent rect. 3 1
989 328.77 atmosphere 1000.0 720 > th dose independent rect. 7 2