BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0205100 Os05g0205100|AK111332
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0205100 NLI interacting factor domain containing protein 362 e-100
Os03g0850100 NLI interacting factor domain containing protein 105 4e-23
Os01g0629400 NLI interacting factor domain containing protein 94 1e-19
Os01g0665300 NLI interacting factor domain containing protein 89 3e-18
>Os05g0205100 NLI interacting factor domain containing protein
Length = 307
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/307 (65%), Positives = 201/307 (65%)
Query: 1 MVSRTPTKQPLSPLPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKSLAATFDTS 60
MVSRTPTKQPLSPLPR IKSLAATFDTS
Sbjct: 1 MVSRTPTKQPLSPLPRAASGSPTKPTPSPSPSPASARRRRVLRRGSPGRIKSLAATFDTS 60
Query: 61 LRGCXXXXXXXXXXXXXXGSPTKXXXXXXXXXXXXXXXXXXXXXXXXXNQXXXXXXXXXX 120
LRGC GSPTK NQ
Sbjct: 61 LRGCRRRLLKLFARLAVLGSPTKRRAAAAGFRRLRSPPRSPSPPTPKPNQVAAVSPQLPL 120
Query: 121 XXXXXXXGRRTLFLDLDETLIHSQTDPAARARHDFAVRPVIAGQAVTFYVVKRPGVDXXX 180
GRRTLFLDLDETLIHSQTDPAARARHDFAVRPVIAGQAVTFYVVKRPGVD
Sbjct: 121 PLPPVSPGRRTLFLDLDETLIHSQTDPAARARHDFAVRPVIAGQAVTFYVVKRPGVDAFL 180
Query: 181 XXXXXXXXXXXXXXGLPEYASLVLDRLDPRGALFAHRLYRGACRDAGDGRLVKDLAATGR 240
GLPEYASLVLDRLDPRGALFAHRLYRGACRDAGDGRLVKDLAATGR
Sbjct: 181 AAAAAAFELVVFTAGLPEYASLVLDRLDPRGALFAHRLYRGACRDAGDGRLVKDLAATGR 240
Query: 241 DLRRAVIVDDNPNAYSLQPDNAVPVAPFIDDADDHELERVMGILSIAAEFDDVRDAIKRY 300
DLRRAVIVDDNPNAYSLQPDNAVPVAPFIDDADDHELERVMGILSIAAEFDDVRDAIKRY
Sbjct: 241 DLRRAVIVDDNPNAYSLQPDNAVPVAPFIDDADDHELERVMGILSIAAEFDDVRDAIKRY 300
Query: 301 KEIVEAS 307
KEIVEAS
Sbjct: 301 KEIVEAS 307
>Os03g0850100 NLI interacting factor domain containing protein
Length = 444
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 129 RRTLFLDLDETLIHSQTDPAARARHDFAVRPVIAGQAVTFYVVKRPGVDXXXXXXXXXXX 188
R TL LDLDETL+HS +P + F V + T YV RP +
Sbjct: 259 RTTLVLDLDETLVHSTLEPCEDSDFTFPVHFNLREH--TIYVRCRPYLKEFLETVASMFE 316
Query: 189 XXXXXXGLPEYASLVLDRLDPRGALFAHRLYRGACRDAGDGRLVKDLAATGRDLRRAVIV 248
YA +L+ LDP+ LF HR+YR +C +G +KDL+ GRDL R VIV
Sbjct: 317 IIIFTASQSIYAEQLLNILDPKRRLFRHRVYRESCLFV-EGNYLKDLSVLGRDLARVVIV 375
Query: 249 DDNPNAYSLQPDNAVPVAPFIDDADDHELERVMGILSIAAEFDDVRDAIKR 299
D++P A+ Q DN VP+ + DD +D EL ++ L +DVR I R
Sbjct: 376 DNSPQAFGFQLDNGVPIESWFDDRNDRELLTLLPFLQSLVGVEDVRPCIAR 426
>Os01g0629400 NLI interacting factor domain containing protein
Length = 177
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 138 ETLIHSQTDPAARARHDFAVRPVIAGQAVTFYVVKRPGVDXXXXXXXXXXXXXXXXXGLP 197
ETL+HS D DF ++ + T YV +RP +
Sbjct: 10 ETLVHSTLDHCDNV--DFTLQVFFNMKNHTVYVRQRPHLKMFLEKVAQMFDLVIFTASQR 67
Query: 198 EYASLVLDRLDPRGALFAHRLYRGACRDAGDGRLVKDLAATGRDLRRAVIVDDNPNAYSL 257
YA ++DRLDP G L +HR+YR +C +G KDL G DL + VIVD+ P + L
Sbjct: 68 IYAEQLIDRLDPDGRLISHRIYRESCI-FSEGCYTKDLTILGVDLAKVVIVDNTPQVFQL 126
Query: 258 QPDNAVPVAPFIDDADDHELERVMGILSIAAEFDDVRDAIKR 299
Q DN +P+ + DD D EL ++ L +DVR I +
Sbjct: 127 QVDNGIPIKSWFDDPSDQELVELLPFLETLVGVEDVRPIISK 168
>Os01g0665300 NLI interacting factor domain containing protein
Length = 439
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 3/171 (1%)
Query: 129 RRTLFLDLDETLIHSQTDPAARARHDFAVRPVIAGQAVTFYVVKRPGVDXXXXXXXXXXX 188
+ TL LDLDETL+HS T+ +DF + YV KRP +
Sbjct: 259 KVTLVLDLDETLVHSTTEQCDD--YDFTFPVFFDMKEHMVYVRKRPHLHMFLQKMAEMFE 316
Query: 189 XXXXXXGLPEYASLVLDRLDPRGALFAHRLYRGACRDAGDGRLVKDLAATGRDLRRAVIV 248
YA +LD LDP LF+ R +R +C + KDL G DL + VI+
Sbjct: 317 VVIFTASQSVYADQLLDILDPEKKLFSRRYFRESCV-FTNTSYTKDLTVVGVDLAKVVII 375
Query: 249 DDNPNAYSLQPDNAVPVAPFIDDADDHELERVMGILSIAAEFDDVRDAIKR 299
D+ P + LQ +N +P+ + D D L +++ L A DDVR I +
Sbjct: 376 DNTPQVFQLQVNNGIPIESWFSDDSDEALPQLIPFLETLASADDVRPIIAK 426
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,956,040
Number of extensions: 239920
Number of successful extensions: 512
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 4
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)