Os01g0665300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NLI interacting factor domain containing protein.
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Os01g0665300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NLI interacting factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.85 | 0.252 | 12.1 | 0.308 | 0.562 | 0.562 | 0.0679 | -0.649 | 0.305 | 0.499 | 19.32 | 1949 | -- | -- |
| 29.45 | 0.253 | 12.1 | 0.398 | 0.554 | 0.672 | 0.0567 | -- | 0.329 | 0.52 | 19.1 | 2021 | -- | -- |
| 28.87 | 0.25 | 12.1 | 0.307 | 0.561 | 0.563 | -- | -0.643 | 0.304 | 0.509 | 19.3 | 1947 | -- | -- |
| 29.45 | 0.253 | 12.1 | 0.391 | 0.556 | 0.686 | -- | -- | 0.327 | 0.523 | 19.15 | 2008 | -- | -- |
| 47.06 | 0.32 | 12.1 | 0.379 | -- | 0.581 | -- | -0.443 | 0.313 | -- | 20.2 | 942 | -- | -- |
| 37.39 | 0.287 | 12 | 0.68 | 0.576 | -- | 0.0781 | -- | 0.452 | 0.426 | -- | -- | -- | -- |
| 37.42 | 0.286 | 12 | 0.677 | 0.575 | -- | -- | -- | 0.451 | 0.445 | -- | -- | -- | -- |
| 47.34 | 0.32 | 12 | 0.429 | -- | 0.694 | -- | -- | 0.331 | -- | 19.61 | 921 | -- | -- |
| 31.71 | 0.262 | 12.1 | -- | 0.568 | 0.917 | -- | -- | 0.239 | 0.454 | 19 | 3308 | -- | -- |
| 58.21 | 0.357 | 12 | 0.697 | -- | -- | -- | -- | 0.461 | -- | -- | -- | -- | -- |
| 49.51 | 0.329 | 12 | -- | 0.585 | -- | -- | -- | 0.376 | 0.503 | -- | -- | -- | -- |
| 49.45 | 0.328 | 12.1 | -- | -- | 0.901 | -- | -- | 0.245 | -- | 19.4 | 2423 | -- | -- |
| 71.02 | 0.393 | 12 | -- | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 2 | 28.21 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 3 | 28.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 4 | 28.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 7 | 28.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 13 | 28.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 14 | 28.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 21 | 28.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 25 | 28.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 33 | 28.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 53 | 28.64 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 65 | 28.66 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 100 | 28.73 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 194 | 28.91 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 205 | 28.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 227 | 28.97 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 273 | 29.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 280 | 29.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 19 |
| 284 | 29.06 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 298 | 29.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 355 | 29.16 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 371 | 29.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 20 |
| 377 | 29.19 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 482 | 29.28 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 491 | 29.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 492 | 29.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 494 | 29.29 | atmosphere | 995 | 43200 | < th | dose independent | sin | 6 | NA |
| 502 | 29.29 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 505 | 29.29 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 506 | 29.29 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 512 | 29.30 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 513 | 29.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 17 |
| 519 | 29.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 525 | 29.31 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 532 | 29.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 541 | 29.32 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 551 | 29.32 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 21 |
| 620 | 29.38 | atmosphere | 995 | 43200 | > th | dose independent | sin | 6 | NA |
| 623 | 29.38 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 648 | 29.40 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 654 | 29.41 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 676 | 29.42 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 20 |
| 752 | 29.48 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 773 | 29.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 776 | 29.49 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 777 | 29.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 784 | 29.50 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 792 | 29.51 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 803 | 29.52 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 812 | 29.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 814 | 29.52 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 835 | 29.55 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 873 | 29.58 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 946 | 29.63 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 951 | 29.63 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 960 | 29.64 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 961 | 29.64 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 10 |