Os01g0629400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NLI interacting factor domain containing protein.
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Os01g0629400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NLI interacting factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.67 | 0.264 | 13 | 0.15 | 1.37 | 0.596 | -0.341 | -0.115 | -0.14 | 7.61 | 78.34 | 1349 | -- | -- |
| 31.68 | 0.262 | 13 | 0.16 | 1.37 | 0.589 | -0.344 | -- | -0.138 | 7.61 | 78.22 | 1350 | -- | -- |
| 31.93 | 0.263 | 13 | 0.13 | 1.39 | 0.582 | -- | -0.104 | -0.14 | 7.74 | 77.77 | 1255 | -- | -- |
| 31.94 | 0.263 | 13 | 0.139 | 1.39 | 0.574 | -- | -- | -0.138 | 7.74 | 77.81 | 1255 | -- | -- |
| 132.12 | 0.535 | 13 | 0.156 | -- | 0.78 | -- | -0.0979 | -0.125 | -- | 78.2 | 1382 | -- | -- |
| 35.99 | 0.281 | 12.9 | 0.188 | 1.39 | -- | -0.343 | -- | -0.11 | 7.5 | -- | -- | -- | -- |
| 36.32 | 0.282 | 12.9 | 0.18 | 1.39 | -- | -- | -- | -0.109 | 7.52 | -- | -- | -- | -- |
| 132.13 | 0.535 | 13 | 0.163 | -- | 0.775 | -- | -- | -0.124 | -- | 78.36 | 1382 | -- | -- |
| 32.44 | 0.265 | 13 | -- | 1.4 | 0.581 | -- | -- | -0.152 | 7.77 | 77.5 | 1223 | -- | -- |
| 139.52 | 0.552 | 13 | 0.201 | -- | -- | -- | -- | -0.0876 | -- | -- | -- | -- | -- |
| 37.18 | 0.285 | 13 | -- | 1.39 | -- | -- | -- | -0.129 | 7.51 | -- | -- | -- | -- |
| 132.82 | 0.537 | 13 | -- | -- | 0.792 | -- | -- | -0.143 | -- | 78.54 | 1382 | -- | -- |
| 140.59 | 0.553 | 13 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.13 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 30.26 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 5 | 30.39 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 6 | 30.46 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 7 | 30.52 | humidity | 80 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 12 | 30.59 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 13 | 30.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 14 | 30.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 22 | 30.64 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 43 | 30.73 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 66 | 30.79 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 68 | 30.79 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 74 | 30.81 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 124 | 30.93 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 125 | 30.93 | wind | 5 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 132 | 30.96 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 140 | 30.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 9 |
| 221 | 31.16 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 227 | 31.17 | wind | 1 | 14400 | > th | dose dependent | rect. | 2 | 2 |
| 233 | 31.19 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 1 |
| 236 | 31.19 | wind | 1 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 261 | 31.25 | wind | 7 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 267 | 31.26 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 281 | 31.27 | humidity | 80 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 286 | 31.28 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 303 | 31.30 | humidity | 80 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 308 | 31.31 | humidity | 80 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 313 | 31.33 | wind | 3 | 14400 | < th | dose independent | sin | 10 | NA |
| 330 | 31.36 | wind | 7 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 351 | 31.38 | wind | 3 | 14400 | > th | dose independent | sin | 10 | NA |
| 378 | 31.42 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 16 |
| 380 | 31.42 | wind | 3 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 385 | 31.42 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 390 | 31.43 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 437 | 31.47 | wind | 5 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 480 | 31.52 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 485 | 31.52 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 505 | 31.54 | wind | 1 | 14400 | > th | dose dependent | rect. | 21 | 16 |
| 548 | 31.59 | wind | 3 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 576 | 31.62 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 613 | 31.64 | wind | 9 | 14400 | < th | dose dependent | rect. | 23 | 14 |
| 614 | 31.64 | wind | 9 | 14400 | < th | dose dependent | rect. | 21 | 16 |
| 616 | 31.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 623 | 31.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 628 | 31.65 | wind | 1 | 14400 | > th | dose dependent | rect. | 21 | 8 |
| 640 | 31.66 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 664 | 31.68 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 1 |
| 795 | 31.78 | wind | 1 | 270 | < th | dose independent | rect. | 23 | 2 |
| 824 | 31.80 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 22 |
| 845 | 31.82 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 853 | 31.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 864 | 31.83 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 888 | 31.85 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 891 | 31.85 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 896 | 31.85 | wind | 1 | 14400 | > th | dose dependent | sin | 7 | NA |
| 907 | 31.86 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 990 | 31.92 | humidity | 90 | 720 | > th | dose independent | rect. | 19 | 4 |
| 991 | 31.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 4 |