BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0629400 Os01g0629400|AK102504
(177 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0629400 NLI interacting factor domain containing protein 366 e-102
Os01g0665300 NLI interacting factor domain containing protein 239 7e-64
Os03g0850100 NLI interacting factor domain containing protein 232 9e-62
Os05g0205100 NLI interacting factor domain containing protein 107 5e-24
Os01g0833100 NLI interacting factor domain containing protein 84 4e-17
Os05g0513200 NLI interacting factor domain containing protein 68 4e-12
>Os01g0629400 NLI interacting factor domain containing protein
Length = 177
Score = 366 bits (940), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 HNLNYFSYAETLVHSTLDHCDNVDFTLQVFFNMKNHTVYVRQRPHLKMFLEKVAQMFDLV 60
HNLNYFSYAETLVHSTLDHCDNVDFTLQVFFNMKNHTVYVRQRPHLKMFLEKVAQMFDLV
Sbjct: 1 HNLNYFSYAETLVHSTLDHCDNVDFTLQVFFNMKNHTVYVRQRPHLKMFLEKVAQMFDLV 60
Query: 61 IFTASQRIYAEQLIDRLDPDGRLISHRIYRESCIFSEGCYTKDLTILGVDLAKVVIVDNT 120
IFTASQRIYAEQLIDRLDPDGRLISHRIYRESCIFSEGCYTKDLTILGVDLAKVVIVDNT
Sbjct: 61 IFTASQRIYAEQLIDRLDPDGRLISHRIYRESCIFSEGCYTKDLTILGVDLAKVVIVDNT 120
Query: 121 PQVFQLQVDNGIPIKSWFDDPSDQELVELLPFLETLVGVEDVRPIISKTFHHTLEQN 177
PQVFQLQVDNGIPIKSWFDDPSDQELVELLPFLETLVGVEDVRPIISKTFHHTLEQN
Sbjct: 121 PQVFQLQVDNGIPIKSWFDDPSDQELVELLPFLETLVGVEDVRPIISKTFHHTLEQN 177
>Os01g0665300 NLI interacting factor domain containing protein
Length = 439
Score = 239 bits (611), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 109/161 (67%), Positives = 136/161 (84%)
Query: 10 ETLVHSTLDHCDNVDFTLQVFFNMKNHTVYVRQRPHLKMFLEKVAQMFDLVIFTASQRIY 69
ETLVHST + CD+ DFT VFF+MK H VYVR+RPHL MFL+K+A+MF++VIFTASQ +Y
Sbjct: 268 ETLVHSTTEQCDDYDFTFPVFFDMKEHMVYVRKRPHLHMFLQKMAEMFEVVIFTASQSVY 327
Query: 70 AEQLIDRLDPDGRLISHRIYRESCIFSEGCYTKDLTILGVDLAKVVIVDNTPQVFQLQVD 129
A+QL+D LDP+ +L S R +RESC+F+ YTKDLT++GVDLAKVVI+DNTPQVFQLQV+
Sbjct: 328 ADQLLDILDPEKKLFSRRYFRESCVFTNTSYTKDLTVVGVDLAKVVIIDNTPQVFQLQVN 387
Query: 130 NGIPIKSWFDDPSDQELVELLPFLETLVGVEDVRPIISKTF 170
NGIPI+SWF D SD+ L +L+PFLETL +DVRPII+K F
Sbjct: 388 NGIPIESWFSDDSDEALPQLIPFLETLASADDVRPIIAKKF 428
>Os03g0850100 NLI interacting factor domain containing protein
Length = 444
Score = 232 bits (592), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 135/162 (83%)
Query: 10 ETLVHSTLDHCDNVDFTLQVFFNMKNHTVYVRQRPHLKMFLEKVAQMFDLVIFTASQRIY 69
ETLVHSTL+ C++ DFT V FN++ HT+YVR RP+LK FLE VA MF+++IFTASQ IY
Sbjct: 268 ETLVHSTLEPCEDSDFTFPVHFNLREHTIYVRCRPYLKEFLETVASMFEIIIFTASQSIY 327
Query: 70 AEQLIDRLDPDGRLISHRIYRESCIFSEGCYTKDLTILGVDLAKVVIVDNTPQVFQLQVD 129
AEQL++ LDP RL HR+YRESC+F EG Y KDL++LG DLA+VVIVDN+PQ F Q+D
Sbjct: 328 AEQLLNILDPKRRLFRHRVYRESCLFVEGNYLKDLSVLGRDLARVVIVDNSPQAFGFQLD 387
Query: 130 NGIPIKSWFDDPSDQELVELLPFLETLVGVEDVRPIISKTFH 171
NG+PI+SWFDD +D+EL+ LLPFL++LVGVEDVRP I++ F+
Sbjct: 388 NGVPIESWFDDRNDRELLTLLPFLQSLVGVEDVRPCIARKFN 429
>Os05g0205100 NLI interacting factor domain containing protein
Length = 307
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 10 ETLVHSTLDHCDNV--DFTLQVFFNMKNHTVYVRQRPHLKMFLEKVAQMFDLVIFTASQR 67
ETL+HS D DF ++ + T YV +RP + FL A F+LV+FTA
Sbjct: 138 ETLIHSQTDPAARARHDFAVRPVIAGQAVTFYVVKRPGVDAFLAAAAAAFELVVFTAGLP 197
Query: 68 IYAEQLIDRLDPDGRLISHRIYRESCI-FSEGCYTKDLTILGVDLAKVVIVDNTPQVFQL 126
YA ++DRLDP G L +HR+YR +C +G KDL G DL + VIVD+ P + L
Sbjct: 198 EYASLVLDRLDPRGALFAHRLYRGACRDAGDGRLVKDLAATGRDLRRAVIVDDNPNAYSL 257
Query: 127 QVDNGIPIKSWFDDPSDQELVELLPFLETLVGVEDVRPIISK 168
Q DN +P+ + DD D EL ++ L +DVR I +
Sbjct: 258 QPDNAVPVAPFIDDADDHELERVMGILSIAAEFDDVRDAIKR 299
>Os01g0833100 NLI interacting factor domain containing protein
Length = 312
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 32 NMKNHTVYVRQRPHLKMFLEKVAQMFDLVIFTASQRIYAEQLIDRLDPDGRLISHRIYRE 91
N NH V V +RP L FL+K ++ DL++FTA YA L+DR+D R R+YR
Sbjct: 155 NKVNH-VTVFERPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRIDVHNRF-KLRLYRP 212
Query: 92 SCIFSE-GCYTKDLTILGVDLAKVVIVDNTPQVFQLQVDNGIPIKSWFDDP-SDQELVEL 149
S + +E + KDL+ + D +VVIVDN P F LQ NGIP + +D +L+E+
Sbjct: 213 STVTTEYREHVKDLSCVSKDFCRVVIVDNNPFSFILQPLNGIPCVPFSAGQHNDNQLMEV 272
Query: 150 L-PFLETLVGVEDVRPIISKTFH 171
+ P L+ L DVRP + + FH
Sbjct: 273 IFPLLKHLSIQRDVRPALYERFH 295
>Os05g0513200 NLI interacting factor domain containing protein
Length = 366
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Query: 42 QRPHLKMFLEKVAQMFDLVIFTASQRIYAEQLIDRLDPDGRLISHRIYRESCIFSEGCYT 101
+RP + F+E + + +++V+++ +Y + +++RLD G I+ R+ R + + +G +
Sbjct: 206 KRPGVDAFIEHMGKFYEVVVYSDQMPMYVDPVLERLDTKG-FITGRLSRPATKYQDGKHY 264
Query: 102 KDLTILGVDLAKVVIVDNTPQVFQLQVDNGIPIKSWFDDPSDQELVELLPFLE--TLVGV 159
+DL+ L + A+V+ + + LQ +N + IK W + D +L++L+PFLE +V
Sbjct: 265 RDLSKLNRNPAQVIYISSHALESCLQPENCVQIKPWKLETDDTQLLDLIPFLEYVAMVRP 324
Query: 160 EDVRPIIS 167
D+R +++
Sbjct: 325 SDIRTVLA 332
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.141 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,623,898
Number of extensions: 212973
Number of successful extensions: 518
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 6
Length of query: 177
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 83
Effective length of database: 12,127,685
Effective search space: 1006597855
Effective search space used: 1006597855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)