Os05g0513200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NLI interacting factor domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0513200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : NLI interacting factor domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.29 | 0.713 | 3.67 | 0.74 | 0.731 | 1.2 | 1.85 | -4.49 | 0.456 | 18.8 | 26.73 | 11 | -- | -- |
| 235.12 | 0.72 | 3.62 | 1.11 | 0.728 | 0.857 | 1.71 | -- | 0.535 | 18.9 | 26.7 | 11 | -- | -- |
| 238.54 | 0.725 | 3.66 | 0.736 | 0.726 | 1.27 | -- | -3.94 | 0.467 | 19.1 | 26.7 | 11 | -- | -- |
| 242.54 | 0.73 | 3.62 | 1.07 | 0.722 | 0.931 | -- | -- | 0.538 | 19 | 26.7 | 11 | -- | -- |
| 263.71 | 0.756 | 3.64 | 0.693 | -- | 1.52 | -- | -3.72 | 0.444 | -- | 26.5 | 23 | -- | -- |
| 245.66 | 0.735 | 3.62 | 1.21 | 0.881 | -- | 1.95 | -- | 0.548 | 18.1 | -- | -- | -- | -- |
| 254.93 | 0.748 | 3.61 | 1.19 | 0.892 | -- | -- | -- | 0.556 | 17.9 | -- | -- | -- | -- |
| 262.4 | 0.754 | 3.61 | 1 | -- | 1.14 | -- | -- | 0.498 | -- | 25.84 | 243 | -- | -- |
| 271.38 | 0.771 | 3.65 | -- | 0.674 | 1.17 | -- | -- | 0.404 | 19.5 | 26.3 | 11 | -- | -- |
| 296.18 | 0.804 | 3.6 | 1.16 | -- | -- | -- | -- | 0.535 | -- | -- | -- | -- | -- |
| 292.18 | 0.8 | 3.64 | -- | 0.874 | -- | -- | -- | 0.423 | 17.9 | -- | -- | -- | -- |
| 288.12 | 0.791 | 3.65 | -- | -- | 1.22 | -- | -- | 0.316 | -- | 24.4 | 273 | -- | -- |
| 331.79 | 0.85 | 3.63 | -- | -- | -- | -- | -- | 0.406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.79 | wind | 1 | 90 | < th | dose independent | rect. | 21 | 1 |
| 2 | 219.84 | wind | 1 | 10 | < th | dose dependent | rect. | 13 | 9 |
| 6 | 220.00 | wind | 1 | 90 | < th | dose dependent | rect. | 20 | 2 |
| 16 | 220.39 | wind | 1 | 90 | < th | dose independent | rect. | 16 | 6 |
| 48 | 221.54 | wind | 1 | 10 | < th | dose independent | rect. | 13 | 9 |
| 107 | 225.87 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 14 |
| 109 | 225.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 119 | 226.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 145 | 227.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 157 | 227.46 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 228 | 229.01 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 229 | 229.01 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 15 | 8 |
| 289 | 229.83 | temperature | 25 | 10 | > th | dose dependent | sin | 1 | NA |
| 290 | 229.83 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 325 | 230.23 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 8 |
| 377 | 230.60 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 13 |
| 419 | 230.91 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 18 | 5 |
| 428 | 230.97 | humidity | 80 | 30 | > th | dose independent | rect. | 20 | 3 |
| 481 | 231.44 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 491 | 231.52 | temperature | 25 | 30 | > th | dose independent | rect. | 18 | 5 |
| 504 | 231.62 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 8 |
| 517 | 231.74 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 519 | 231.74 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 20 | 3 |
| 521 | 231.75 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 546 | 231.89 | wind | 1 | 90 | < th | dose dependent | rect. | 8 | 14 |
| 602 | 232.29 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 11 |
| 607 | 232.31 | wind | 1 | 30 | < th | dose dependent | rect. | 6 | 17 |
| 612 | 232.36 | wind | 5 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 635 | 232.47 | wind | 3 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 640 | 232.50 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 708 | 232.74 | wind | 5 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 753 | 233.00 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 14 |
| 767 | 233.05 | wind | 3 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 772 | 233.08 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 784 | 233.13 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 794 | 233.16 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 1 |
| 806 | 233.20 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 9 |
| 826 | 233.25 | wind | 5 | 14400 | > th | dose independent | rect. | 2 | 15 |
| 829 | 233.27 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 845 | 233.31 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 21 | 8 |
| 847 | 233.31 | wind | 5 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 891 | 233.37 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 908 | 233.41 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 21 | 19 |
| 920 | 233.45 | wind | 5 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 950 | 233.50 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |