BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0831300 Os01g0831300|AK109023
(219 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0831300 Similar to Ammonium transporter 400 e-112
Os01g0831900 Similar to Ammonium transporter 357 5e-99
Os05g0468700 Ammonium transporter 338 2e-93
Os02g0550800 Ammonium transporter family protein 297 4e-81
Os01g0870300 Ammonium transporter 284 3e-77
Os12g0105100 233 8e-62
Os11g0105300 233 8e-62
Os03g0838400 Similar to Ammonium transporter 158 3e-39
>Os01g0831300 Similar to Ammonium transporter
Length = 219
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 19 EWLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASTLIVWVLV 78
EWLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASTLIVWVLV
Sbjct: 19 EWLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASTLIVWVLV 78
Query: 79 GFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDGALESPRTEPFYPEASMVL 138
GFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDGALESPRTEPFYPEASMVL
Sbjct: 79 GFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDGALESPRTEPFYPEASMVL 138
Query: 139 FQFELAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVCAFSLWGGGFLYQWGVIDYS 198
FQFELAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVCAFSLWGGGFLYQWGVIDYS
Sbjct: 139 FQFELAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVCAFSLWGGGFLYQWGVIDYS 198
Query: 199 GGYVIHLSSGIAGFTAAYWVR 219
GGYVIHLSSGIAGFTAAYWVR
Sbjct: 199 GGYVIHLSSGIAGFTAAYWVR 219
>Os01g0831900 Similar to Ammonium transporter
Length = 501
Score = 357 bits (915), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 176/199 (88%), Positives = 184/199 (92%)
Query: 20 WLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASTLIVWVLVG 79
WLN GD WQL AATFVG+QSMPGLVV+YGSIVKKKWAVNSAFMALYAYASTLIVWVLVG
Sbjct: 24 WLNKGDTAWQLVAATFVGIQSMPGLVVIYGSIVKKKWAVNSAFMALYAYASTLIVWVLVG 83
Query: 80 FRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDGALESPRTEPFYPEASMVLF 139
FRMAFGDRLLPFW KAG ALT+ FLV RA PATAHYG DG LE+PRTEPFY EA++VLF
Sbjct: 84 FRMAFGDRLLPFWAKAGPALTQDFLVQRAVFPATAHYGSDGTLETPRTEPFYAEAALVLF 143
Query: 140 QFELAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVCAFSLWGGGFLYQWGVIDYSG 199
+FE AAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTV AFSLWGGGFLYQWGVIDYSG
Sbjct: 144 EFEFAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVGAFSLWGGGFLYQWGVIDYSG 203
Query: 200 GYVIHLSSGIAGFTAAYWV 218
GYVIHLSSG+AGFTAAYWV
Sbjct: 204 GYVIHLSSGVAGFTAAYWV 222
>Os05g0468700 Ammonium transporter
Length = 486
Score = 338 bits (866), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/200 (84%), Positives = 184/200 (92%), Gaps = 6/200 (3%)
Query: 19 EWLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASTLIVWVLV 78
+WLN GDN WQL A+T VG+QSMPGLVVLYGSIVKKKWAVNSAFMALYAYAS+L+VWVLV
Sbjct: 16 DWLNKGDNAWQLTASTLVGIQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASSLLVWVLV 75
Query: 79 GFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDGALESPRTEPFYPEASMVL 138
GFRMAFGD+LLPFWGKAG ALT+ +LV RA++PATAH GA+ PRTEPFYPEA++VL
Sbjct: 76 GFRMAFGDQLLPFWGKAGVALTQSYLVGRATLPATAH----GAI--PRTEPFYPEATLVL 129
Query: 139 FQFELAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVCAFSLWGGGFLYQWGVIDYS 198
FQFE AAITLVLLAGS+LGRMNIKAWMAFTPLWLL SYTV AFSLWGGGFLY+WGVIDYS
Sbjct: 130 FQFEFAAITLVLLAGSVLGRMNIKAWMAFTPLWLLLSYTVGAFSLWGGGFLYRWGVIDYS 189
Query: 199 GGYVIHLSSGIAGFTAAYWV 218
GGYVIHLSSGIAGFTAAYWV
Sbjct: 190 GGYVIHLSSGIAGFTAAYWV 209
>Os02g0550800 Ammonium transporter family protein
Length = 480
Score = 297 bits (761), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 143/200 (71%), Positives = 168/200 (84%)
Query: 19 EWLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASTLIVWVLV 78
+WLN GDN WQ+ +AT VGLQSMPGLV+LYGSIVKKKWA+NSAFMALYA+A+ I WV+
Sbjct: 18 DWLNKGDNAWQMTSATLVGLQSMPGLVILYGSIVKKKWAINSAFMALYAFAAVWICWVVW 77
Query: 79 GFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDGALESPRTEPFYPEASMVL 138
+ M+FGDRLLPFWGKA AL + FLVA++ + ATA +G+ E+P +P YP A+MV
Sbjct: 78 AYNMSFGDRLLPFWGKARPALGQSFLVAQSELTATAIRYHNGSAEAPMLKPLYPVATMVY 137
Query: 139 FQFELAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVCAFSLWGGGFLYQWGVIDYS 198
FQ A+IT+++LAGSLLGRMNIKAWMAF PLW+ FSYTVCAFSLWGGGFL+QWGVIDYS
Sbjct: 138 FQCMFASITIIILAGSLLGRMNIKAWMAFVPLWITFSYTVCAFSLWGGGFLFQWGVIDYS 197
Query: 199 GGYVIHLSSGIAGFTAAYWV 218
GGYVIHLSSGIAG TAAYWV
Sbjct: 198 GGYVIHLSSGIAGLTAAYWV 217
>Os01g0870300 Ammonium transporter
Length = 498
Score = 284 bits (727), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 141/205 (68%), Positives = 164/205 (80%), Gaps = 5/205 (2%)
Query: 19 EWLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASTLIVWVLV 78
EWLN GDN WQ+ +AT VG+QS+PGLV+LYGSIVKKKWAVNSAFMALYA+A+ + WV
Sbjct: 21 EWLNKGDNAWQMISATLVGMQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVWLCWVTW 80
Query: 79 GFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHY-----GKDGALESPRTEPFYPE 133
G+ M+FG +LLPFWGKA AL + FL+A+A +P T + G D +E+P P YP
Sbjct: 81 GYNMSFGHKLLPFWGKARPALGQSFLLAQAVLPQTTQFYKGGGGADAVVETPWVNPLYPM 140
Query: 134 ASMVLFQFELAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVCAFSLWGGGFLYQWG 193
A+MV FQ AAITL+LLAGSLLGRMNIKAWM F PLWL FSYTV AFSLWGGGFL+ WG
Sbjct: 141 ATMVYFQCVFAAITLILLAGSLLGRMNIKAWMLFVPLWLTFSYTVGAFSLWGGGFLFHWG 200
Query: 194 VIDYSGGYVIHLSSGIAGFTAAYWV 218
V+DYSGGYVIHLSSG+AGFTAAYWV
Sbjct: 201 VMDYSGGYVIHLSSGVAGFTAAYWV 225
>Os12g0105100
Length = 458
Score = 233 bits (594), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 110/200 (55%), Positives = 145/200 (72%)
Query: 19 EWLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASTLIVWVLV 78
EWLN GDN WQ+ +AT V LQ PGL + Y V +K A+ SAFMALYA A+T+ W L
Sbjct: 8 EWLNKGDNAWQMLSATLVALQGFPGLALFYAGAVTRKCALTSAFMALYAMAATMPCWALW 67
Query: 79 GFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDGALESPRTEPFYPEASMVL 138
MAFG RLLPF G+ AL + +++ +A +P T H +G +E+ P YP ASMV
Sbjct: 68 AHNMAFGHRLLPFVGRPAPALAQHYMLTQALLPFTLHLHSNGEVETAAVAPLYPSASMVF 127
Query: 139 FQFELAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVCAFSLWGGGFLYQWGVIDYS 198
FQ+ A +T+ L+AG++LGRM++KAWMAF PLW SYTV A+S+WGGGFL+ WGV+DYS
Sbjct: 128 FQWASAGVTVGLVAGAVLGRMSVKAWMAFVPLWTTLSYTVGAYSIWGGGFLFHWGVMDYS 187
Query: 199 GGYVIHLSSGIAGFTAAYWV 218
GGYV+HL++G++G+TAAYWV
Sbjct: 188 GGYVVHLAAGVSGYTAAYWV 207
>Os11g0105300
Length = 326
Score = 233 bits (594), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 110/200 (55%), Positives = 147/200 (73%)
Query: 19 EWLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASTLIVWVLV 78
EWLN GDN WQ+ +AT V LQ PGL + Y V +KWA+ SAFMALYA A+T+ W L
Sbjct: 8 EWLNKGDNAWQMLSATLVALQGFPGLALFYVGAVPRKWALTSAFMALYAMAATMPCWALW 67
Query: 79 GFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDGALESPRTEPFYPEASMVL 138
MAFG RLLPF G+ AL + +++++A +P+T H +G +E+ P YP ASMV
Sbjct: 68 AHNMAFGRRLLPFVGRPAPALAQDYMLSQALLPSTLHLRSNGEVETAAVAPLYPSASMVF 127
Query: 139 FQFELAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVCAFSLWGGGFLYQWGVIDYS 198
FQ+ A +T+ L+AG++LGRM++KAWMAF PLW SYTV A+S+WGGGFL+ WGV+DYS
Sbjct: 128 FQWAFAGVTVGLVAGAVLGRMSVKAWMAFVPLWTTLSYTVGAYSIWGGGFLFHWGVMDYS 187
Query: 199 GGYVIHLSSGIAGFTAAYWV 218
GGYV+ L++G++G+TAAYWV
Sbjct: 188 GGYVVLLAAGVSGYTAAYWV 207
>Os03g0838400 Similar to Ammonium transporter
Length = 369
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 88/110 (80%)
Query: 109 SVPATAHYGKDGALESPRTEPFYPEASMVLFQFELAAITLVLLAGSLLGRMNIKAWMAFT 168
S AT HY DG++E+ EP YP A++V FQ AAITL+L+AGSLLGRM+ AWM F
Sbjct: 2 SSSATVHYRADGSVETAAVEPLYPMATVVYFQCVFAAITLILVAGSLLGRMSFLAWMIFV 61
Query: 169 PLWLLFSYTVCAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGFTAAYWV 218
PLWL FSYTV AFSLWGGGFL+ WGVIDY GGYVIH+S+GIAGFTAAYWV
Sbjct: 62 PLWLTFSYTVGAFSLWGGGFLFHWGVIDYCGGYVIHVSAGIAGFTAAYWV 111
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.138 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,295,916
Number of extensions: 289269
Number of successful extensions: 809
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 8
Length of query: 219
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 122
Effective length of database: 11,971,043
Effective search space: 1460467246
Effective search space used: 1460467246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)